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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043665 ID=TCONS_00043665|Name=TCONS_00043665|organism=Clytia hemisphaerica|type=transcript|length=1808bp CTTTGCCGCTGTCTTCTACAATGAATGATGTCCTTATCAAcgcaaaaaaa ctgtttttcccTGATGAGAAAAACATGAAGGGGAATATTTACGATTTTGA GGTGTCACTCTGCGACTTCAAAATGAGCGAATTTACTACAGCAGAATTTG ACAAAACGGTTAAAGAATACAGAGATGAACATAGCCTTTCACACAAAGAA ACACGATTtattctaaaaacaaaacaatttggTAAATTCAAGCGGCTCGA GAATGCACACAATCATTCAAAGCTATCAACAAATGATGATGTCGATGATG GTTTTATCCCCAAAAAGCAGaAAAGAGAATACGAACAAAACGAGATTGAA AATAGATCGAATGAGAAGGAAGACGAACTAGACGAGGTTGAAAGCAGATT GAATGAGAAGGAAGACGAATCAAACAAGAAAGAAGCCAGATTGGAAGAGA ATGGCAACAGTGATCTTTCTGTATTTGACGAATCAAAGAAGGTGATTGAC GAAATTGATCTAACTGGGACAGTTTTTGAACTAACTACGAACTCCCAAGA AATGATGGATAGCAACTTCGAAGAATTGAATTGTGCAAGATTGAAAGCCT CTGAAAGATTTTCAACAATGGCTGTTGAATTTGTCCGAGACAAGATTTAT GACCAAATGACCGATATGTATCAAAAACGACACAGTGTTTTGAACAAACT GATCATTACTATTTTTGAAGAAGAGGGACTTGGTGATGGCATATCAAAAG ATGCATACTCAGAATTTTTCAGCCAAATGTACGAAAAATTTGATGGAGAA TTTGAGAAGGTGCCAACAACTATAGATGAAGATGAGCTAGTTATCATTGG TAGGATAATCTCCCATGCATTTATCACGTATGGTGTCTTTCCATTACAAA TTAGCTCTGCTTCACTAACATACTATCTGTATGGTGAAGCCTCCGATGAT GAAATTTTAGACAGCTTCAAGAAATTTTTACTTCCGAAAGAAGCTGATCT TTTTGAAAAGTTCAAAGCTGGGCAATCTTCGCTTGACGTTATGCTTGGCC TCATTCTAGCTGAGTACAACATATTTACAAAGCCCACTGAAGGAAATATC AACCAACTTATGTTAAAGGCAGGCAAAAATGCTTTACTACGAAACCCTTG CTTCGCATTCCAAAGTCTCGTCAAAGGGATGAATGAAAACCCTATTTGGA AAAGGTTCTCCAAACCGCATATAACGGCATGGTTTGCGTTAAATCAACCA AGTCCTGAAAAGTTGATAAAATGTCTATTGGTAACCGAAGAAAACAAGCA AGAAGGAAAAGTGGTTACCTGGCTACACAGGTATATCAGAGGTTGCTCTA AAGACAAGCTACATAAGCTGGTACGCTTTATTACTGGAGCCGTCTCCATC ACTCCAACAGCCATTATCAAAGTCACATTTGTTGATCAAATGGTTACTTC GCTGCGTCCAGGGAGTAAGACATGCTTCAAAATCTTATATGTCCCGAGAC AGTACTTTTCTTTTACAAACTTGAAATCGAATTTCGATTTTTATCTTGAC AGCAAAAGTACTTGGTCTGTCCATGATTAGATTCTAGTATTTCTTTAGGA TTTATGCTTTCTGTTCTTTAAAAAGTCGTTGATATTTTATTTGTTTACGT TTTAGTGTCTCATTATTATGCTTCGTAGTTGCCACTTTTGTTAAGGAATA TGTGTCACTGAAGAATAAATTCACAGGAAAGGTTTTTTGCAGTGCGTTTT GGTAACTTTCAAATAAAACCAAATTTGTGAAAATTGAAGCAAACAAAAGA GAGTGCAC Run BLAST on NCBI protein sequence of TCONS_00043665-protein >TCONS_00043665-protein ID=TCONS_00043665-protein|Name=TCONS_00043665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp
LPLSSTMNDVLINAKKLFFPDEKNMKGNIYDFEVSLCDFKMSEFTTAEFD KTVKEYRDEHSLSHKETRFILKTKQFGKFKRLENAHNHSKLSTNDDVDDG FIPKKQKREYEQNEIENRSNEKEDELDEVESRLNEKEDESNKKEARLEEN GNSDLSVFDESKKVIDEIDLTGTVFELTTNSQEMMDSNFEELNCARLKAS ERFSTMAVEFVRDKIYDQMTDMYQKRHSVLNKLIITIFEEEGLGDGISKD AYSEFFSQMYEKFDGEFEKVPTTIDEDELVIIGRIISHAFITYGVFPLQI SSASLTYYLYGEASDDEILDSFKKFLLPKEADLFEKFKAGQSSLDVMLGL ILAEYNIFTKPTEGNINQLMLKAGKNALLRNPCFAFQSLVKGMNENPIWK RFSKPHITAWFALNQPSPEKLIKCLLVTEENKQEGKVVTWLHRYIRGCSK DKLHKLVRFITGAVSITPTAIIKVTFVDQMVTSLRPGSKTCFKILYVPRQ YFSFTNLKSNFDFYLDSKSTWSVHD Run BLAST on NCBI transcript from alignment at sc0004448:1..3011+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043665 ID=TCONS_00043665|Name=TCONS_00043665|organism=Clytia hemisphaerica|type=transcript|length=3011bp|location=Sequence derived from alignment at sc0004448:1..3011+ (Clytia hemisphaerica) CTTTGCCGCTGTCTTCTACAATGAATGATGTCCTTATCAAcgcaaaaaaa
ctgtttttcccTGATGAGAAAAACATGAAGGGGAATATTTACGATTTTGA
GGTGTCACTCTGCGACTTCAAAATGAGCGAATTTACTACAGCAGAATTTG
ACAAAACGGTTAAAGAATACAGAGATGAACATAGCCTTTCACACAAAGAA
ACACGATTtattctaaaaacaaaacaatttggTAAATTCAAGCGGCTCGA
GAATGCACACAATCATTCAAAGCTATCAACAAATGATGATGTCGATGATG
GTTTTATCCCCAAAAAGCAGGTACATTAGCTTTATCATTGCATATAAAAC
AAAACCCAAGTTTTTTATCCAAACAGGTCTAAAGTGAGTTCATGGACTAT
TTATTAATAATTTTCACCAACTTTGGGCTTACACTTAAACCTTTTAGTGT
AAAAGACAgccaaaaatgttatttttttgggcaaaatacctagtttttcc
ttgtttttttttcaggattttctgaaatttccacccttagtGCACTTCTT
CATTTACCAACCTTTGCAGCgcattaaatattttgaaaagggTACCCTTA
GGGTCTGCACATATCTGTCAGTCATTTTTCCAGCCCCCCCCCTTAGTCAC
TAAAATTAAAACCTAGGCTACACAGGTTAATTTTAAGATCTTGATTACAC
GTGTTTGTTTCTTAAGCATAGGAATCCTTAGAGCTGAGTTTGGCATATGC
CTAAATTTTTATGGTTCTATACAATGGTGTTAtgctttttcctttttcag
tATACagtaaaactgaataaaaagtccataaaaattcaacttttgtgACA
TAACTTTGAGTGCACCTCTTTTGAtgttttgggtcggaaatttccaggtg
ggatttggaaattttcaggttttaggtgggagaaacaagttaaggtgggg
attaatttctttaggtgggatttttggtgttttgataaaagttaatgtta
gttttttcttattaccaatttaattataatttttcctaaatttcatattc
tataaataattcttttactatactaaacttttctcctttttatttttaaa
cagtaagaatttttgtttagtttaatcgaattagtataatttttcgtggg
gatagcatttttagctgggatctggtaGTTTGGAttgaaggtgggaattt
tagggttAGGTGGGACCTAAATTTTTAGGTgtgacctggaaccccctttg
CACACTATGAATCATTTTTTATCACCTTCAAGTTTTCCTTGCAtgatgaa
attattatttttatatttcattttcacagaAAAGAGAATACGAACAAAAC
GAGATTGAAAATAGATCGAATGAGAAGGAAGACGAACTAGACGAGGTTGA
AAGCAGATTGAATGAGAAGGAAGACGAATCAAACAAGAAAGAAGCCAGAT
TGGAAGAGAATGGCAACAGTGATCTTTCTGGTAAGTTAGCCTGGTCAATG
TTTAGTGGTGCTTAAGCTTAATTGGAGCGGGCtttggttaaaaaaaaaac
ggggCAAAAAGTTGTCCCCTCTATCTCTAGATTGGCttgactttttggac
ctaccccaaGTTCCAAACCTTTGATTTGTCCATCAGTCCGTCCGTATATA
ATTTTCATATGATATTTTCTTTAGTATTTGACGAATCAAAGAAGGTGATT
GACGAAATTGATCTAACTGGGACAGTTTTTGAACTAACTACGAACTCCCA
AGAAATGATGGATAGCAACTTCGAAGAATTGAATTGTGCAAGATTGAAAG
CCTCTGAAAGATTTTCAACAATGGCTGTTGAATTTGTCCGAGACAAGATT
TATGACCAAATGACCGATATGTATCAAAAACGACACAGTGTTTTGAACAA
ACTGATCATTACTATTTTTGAAGAAGAGGGACTTGGTGATGGCATATCAA
AAGATGCATACTCAGAATTTTTCAGCCAAATGTACGAAAAATTTGATGGA
GAATTTGAGAAGGTGCCAACAACTATAGATGAAGATGAGCTAGTTATCAT
TGGTAGGATAATCTCCCATGCATTTATCACGTATGGTGTCTTTCCATTAC
AAATTAGCTCTGCTTCACTAACATACTATCTGTATGGTGAAGCCTCCGAT
GATGAAATTTTAGACAGCTTCAAGAAATTTTTACTTCCGAAAGAAGCTGA
TCTTTTTGAAAAGTTCAAAGCTGGGCAATCTTCGCTTGACGTTATGCTTG
GCCTCATTCTAGCTGAGTACAACATATTTACAAAGCCCACTGAAGGAAAT
ATCAACCAACTTATGTTAAAGGCAGGCAAAAATGCTTTACTACGAAACCC
TTGCTTCGCATTCCAAAGTCTCGTCAAAGGGATGAATGAAAACCCTATTT
GGAAAAGGTTCTCCAAACCGCATATAACGGCATGGTTTGCGTTAAATCAA
CCAAGTCCTGAAAAGTTGATAAAATGTCTATTGGTAACCGAAGAAAACAA
GCAAGAAGGAAAAGTGGTTACCTGGCTACACAGGTATATCAGAGGTTGCT
CTAAAGACAAGCTACATAAGCTGGTACGCTTTATTACTGGAGCCGTCTCC
ATCACTCCAACAGCCATTATCAAAGTCACATTTGTTGATCAAATGGTTAC
TTCGCTGCGTCCAGGGAGTAAGACATGCTTCAAAATCTTATATGTCCCGA
GACAGTACTTTTCTTTTACAAACTTGAAATCGAATTTCGATTTTTATCTT
GACAGCAAAAGTACTTGGTCTGTCCATGATTAGATTCTAGTATTTCTTTA
GGATTTATGCTTTCTGTTCTTTAAAAAGTCGTTGATATTTTATTTGTTTA
CGTTTTAGTGTCTCATTATTATGCTTCGTAGTTGCCACTTTTGTTAAGGA
ATATGTGTCACTGAAGAATAAATTCACAGGAAAGGTTTTTTGCAGTGCGT
TTTGGTAACTTTCAAATAAAACCAAATTTGTGAAAATTGAAGCAAACAAA
AGAGAGTGCAC Coding sequence (CDS) from alignment at sc0004448:1..3011+ >TCONS_00043665 ID=TCONS_00043665|Name=TCONS_00043665|organism=Clytia hemisphaerica|type=CDS|length=4734bp|location=Sequence derived from alignment at sc0004448:1..3011+ (Clytia hemisphaerica) TTGCCGCTGTCTTCTACAATGAATGATGTCCTTATCAAcgcaaaaaaact gtttttcccTGATGAGAAAAACATGAAGGGGAATATTTACGATTTTGAGG TGTCACTCTGCGACTTCAAAATGAGCGAATTTACTACAGCAGAATTTGAC AAAACGGTTAAAGAATACAGAGATGAACATAGCCTTTCACACAAAGAAAC ACGATTtattctaaaaacaaaacaatttggTAAATTCAAGCGGCTCGAGA ATGCACACAATCATTCAAAGCTATCAACAAATGATGATGTCGATGATGGT TTTATCCCCAAAAAGCAGaAAAGAGAATACGAACAAAACGAGATTGAAAA TAGATCGAATGAGAAGGAAGACGAACTAGACGAGGTTGAAAGCAGATTGA ATGAGAAGGAAGACGAATCAAACAAGAAAGAAGCCAGATTGGAAGAGAAT GGCAACAGTGATCTTTCTGTATTTGACGAATCAAAGAAGGTGATTGACGA AATTGATCTAACTGGGACAGTTTTTGAACTAACTACGAACTCCCAAGAAA TGATGGATAGCAACTTCGAAGAATTGAATTGTGCAAGATTGAAAGCCTCT GAAAGATTTTCAACAATGGCTGTTGAATTTGTCCGAGACAAGATTTATGA CCAAATGACCGATATGTATCAAAAACGACACAGTGTTTTGAACAAACTGA TCATTACTATTTTTGAAGAAGAGGGACTTGGTGATGGCATATCAAAAGAT GCATACTCAGAATTTTTCAGCCAAATGTACGAAAAATTTGATGGAGAATT TGAGAAGGTGCCAACAACTATAGATGAAGATGAGCTAGTTATCATTGGTA GGATAATCTCCCATGCATTTATCACGTATGGTGTCTTTCCATTACAAATT AGCTCTGCTTCACTAACATACTATCTGTATGGTGAAGCCTCCGATGATGA AATTTTAGACAGCTTCAAGAAATTTTTACTTCCGAAAGAAGCTGATCTTT TTGAAAAGTTCAAAGCTGGGCAATCTTCGCTTGACGTTATGCTTGGCCTC ATTCTAGCTGAGTACAACATATTTACAAAGCCCACTGAAGGAAATATCAA CCAACTTATGTTAAAGGCAGGCAAAAATGCTTTACTACGAAACCCTTGCT TCGCATTCCAAAGTCTCGTCAAAGGGATGAATGAAAACCCTATTTGGAAA AGGTTCTCCAAACCGCATATAACGGCATGGTTTGCGTTAAATCAACCAAG TCCTGAAAAGTTGATAAAATGTCTATTGGTAACCGAAGAAAACAAGCAAG AAGGAAAAGTGGTTACCTGGCTACACAGGTATATCAGAGGTTGCTCTAAA GACAAGCTACATAAGCTGGTACGCTTTATTACTGGAGCCGTCTCCATCAC TCCAACAGCCATTATCAAAGTCACATTTGTTGATCAAATGGTTACTTCGC TGCGTCCAGGGAGTAAGACATGCTTCAAAATCTTATATGTCCCGAGACAG TACTTTTCTTTTACAAACTTGAAATCGAATTTCGATTTTTATCTTGACAG CAAAAGTACTTGGTCTGTCCATGATTAGTTGCCGCTGTCTTCTACAATGA ATGATGTCCTTATCAAcgcaaaaaaactgtttttcccTGATGAGAAAAAC ATGAAGGGGAATATTTACGATTTTGAGGTGTCACTCTGCGACTTCAAAAT GAGCGAATTTACTACAGCAGAATTTGACAAAACGGTTAAAGAATACAGAG ATGAACATAGCCTTTCACACAAAGAAACACGATTtattctaaaaacaaaa caatttggTAAATTCAAGCGGCTCGAGAATGCACACAATCATTCAAAGCT ATCAACAAATGATGATGTCGATGATGGTTTTATCCCCAAAAAGCAGaAAA GAGAATACGAACAAAACGAGATTGAAAATAGATCGAATGAGAAGGAAGAC GAACTAGACGAGGTTGAAAGCAGATTGAATGAGAAGGAAGACGAATCAAA CAAGAAAGAAGCCAGATTGGAAGAGAATGGCAACAGTGATCTTTCTGTAT TTGACGAATCAAAGAAGGTGATTGACGAAATTGATCTAACTGGGACAGTT TTTGAACTAACTACGAACTCCCAAGAAATGATGGATAGCAACTTCGAAGA ATTGAATTGTGCAAGATTGAAAGCCTCTGAAAGATTTTCAACAATGGCTG TTGAATTTGTCCGAGACAAGATTTATGACCAAATGACCGATATGTATCAA AAACGACACAGTGTTTTGAACAAACTGATCATTACTATTTTTGAAGAAGA GGGACTTGGTGATGGCATATCAAAAGATGCATACTCAGAATTTTTCAGCC AAATGTACGAAAAATTTGATGGAGAATTTGAGAAGGTGCCAACAACTATA GATGAAGATGAGCTAGTTATCATTGGTAGGATAATCTCCCATGCATTTAT CACGTATGGTGTCTTTCCATTACAAATTAGCTCTGCTTCACTAACATACT ATCTGTATGGTGAAGCCTCCGATGATGAAATTTTAGACAGCTTCAAGAAA TTTTTACTTCCGAAAGAAGCTGATCTTTTTGAAAAGTTCAAAGCTGGGCA ATCTTCGCTTGACGTTATGCTTGGCCTCATTCTAGCTGAGTACAACATAT TTACAAAGCCCACTGAAGGAAATATCAACCAACTTATGTTAAAGGCAGGC AAAAATGCTTTACTACGAAACCCTTGCTTCGCATTCCAAAGTCTCGTCAA AGGGATGAATGAAAACCCTATTTGGAAAAGGTTCTCCAAACCGCATATAA CGGCATGGTTTGCGTTAAATCAACCAAGTCCTGAAAAGTTGATAAAATGT CTATTGGTAACCGAAGAAAACAAGCAAGAAGGAAAAGTGGTTACCTGGCT ACACAGGTATATCAGAGGTTGCTCTAAAGACAAGCTACATAAGCTGGTAC GCTTTATTACTGGAGCCGTCTCCATCACTCCAACAGCCATTATCAAAGTC ACATTTGTTGATCAAATGGTTACTTCGCTGCGTCCAGGGAGTAAGACATG CTTCAAAATCTTATATGTCCCGAGACAGTACTTTTCTTTTACAAACTTGA AATCGAATTTCGATTTTTATCTTGACAGCAAAAGTACTTGGTCTGTCCAT GATTAGTTGCCGCTGTCTTCTACAATGAATGATGTCCTTATCAAcgcaaa aaaactgtttttcccTGATGAGAAAAACATGAAGGGGAATATTTACGATT TTGAGGTGTCACTCTGCGACTTCAAAATGAGCGAATTTACTACAGCAGAA TTTGACAAAACGGTTAAAGAATACAGAGATGAACATAGCCTTTCACACAA AGAAACACGATTtattctaaaaacaaaacaatttggTAAATTCAAGCGGC TCGAGAATGCACACAATCATTCAAAGCTATCAACAAATGATGATGTCGAT GATGGTTTTATCCCCAAAAAGCAGaAAAGAGAATACGAACAAAACGAGAT TGAAAATAGATCGAATGAGAAGGAAGACGAACTAGACGAGGTTGAAAGCA GATTGAATGAGAAGGAAGACGAATCAAACAAGAAAGAAGCCAGATTGGAA GAGAATGGCAACAGTGATCTTTCTGTATTTGACGAATCAAAGAAGGTGAT TGACGAAATTGATCTAACTGGGACAGTTTTTGAACTAACTACGAACTCCC AAGAAATGATGGATAGCAACTTCGAAGAATTGAATTGTGCAAGATTGAAA GCCTCTGAAAGATTTTCAACAATGGCTGTTGAATTTGTCCGAGACAAGAT TTATGACCAAATGACCGATATGTATCAAAAACGACACAGTGTTTTGAACA AACTGATCATTACTATTTTTGAAGAAGAGGGACTTGGTGATGGCATATCA AAAGATGCATACTCAGAATTTTTCAGCCAAATGTACGAAAAATTTGATGG AGAATTTGAGAAGGTGCCAACAACTATAGATGAAGATGAGCTAGTTATCA TTGGTAGGATAATCTCCCATGCATTTATCACGTATGGTGTCTTTCCATTA CAAATTAGCTCTGCTTCACTAACATACTATCTGTATGGTGAAGCCTCCGA TGATGAAATTTTAGACAGCTTCAAGAAATTTTTACTTCCGAAAGAAGCTG ATCTTTTTGAAAAGTTCAAAGCTGGGCAATCTTCGCTTGACGTTATGCTT GGCCTCATTCTAGCTGAGTACAACATATTTACAAAGCCCACTGAAGGAAA TATCAACCAACTTATGTTAAAGGCAGGCAAAAATGCTTTACTACGAAACC CTTGCTTCGCATTCCAAAGTCTCGTCAAAGGGATGAATGAAAACCCTATT TGGAAAAGGTTCTCCAAACCGCATATAACGGCATGGTTTGCGTTAAATCA ACCAAGTCCTGAAAAGTTGATAAAATGTCTATTGGTAACCGAAGAAAACA AGCAAGAAGGAAAAGTGGTTACCTGGCTACACAGGTATATCAGAGGTTGC TCTAAAGACAAGCTACATAAGCTGGTACGCTTTATTACTGGAGCCGTCTC CATCACTCCAACAGCCATTATCAAAGTCACATTTGTTGATCAAATGGTTA CTTCGCTGCGTCCAGGGAGTAAGACATGCTTCAAAATCTTATATGTCCCG AGACAGTACTTTTCTTTTACAAACTTGAAATCGAATTTCGATTTTTATCT TGACAGCAAAAGTACTTGGTCTGTCCATGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00043665-exon-sc0004448-1491911889:1..320 | TCONS_00043665-exon-sc0004448-1491911889:1..320 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1510915933:1..320 | TCONS_00043665-exon-sc0004448-1510915933:1..320 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1575043694:1..320 | TCONS_00043665-exon-sc0004448-1575043694:1..320 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1491911889:1330..1480 | TCONS_00043665-exon-sc0004448-1491911889:1330..1480 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1510915933:1330..1480 | TCONS_00043665-exon-sc0004448-1510915933:1330..1480 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1575043694:1330..1480 | TCONS_00043665-exon-sc0004448-1575043694:1330..1480 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1491911889:1675..3011 | TCONS_00043665-exon-sc0004448-1491911889:1675..3011 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1510915933:1675..3011 | TCONS_00043665-exon-sc0004448-1510915933:1675..3011 | Clytia hemisphaerica | exon |
| TCONS_00043665-exon-sc0004448-1575043694:1675..3011 | TCONS_00043665-exon-sc0004448-1575043694:1675..3011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0004448 | supercontig | sc0004448:1..3011 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
|