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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043660 ID=TCONS_00043660|Name=TCONS_00043660|organism=Clytia hemisphaerica|type=transcript|length=1016bp
NNAAATTTTGGTCGGCCAAGCGTATTGATTGTTTGAGGCATTATCATTCG
TAACTTTTGTTCGATCACCTCGGATACTTGTTCATCGAGATCTCTTTCAC
CAGTGTACTCATTTAATGACACTCGTCTTGGTGTTGCACCGGAAGATTGG
ACAGTACACGCGCCAGCTGCTAATTTGTCGATCTTTTCGTTCAGCTCTTT
GAACAGTTTGGCGGAGTTCACATTGTCATTCGGCTTGATCGCGTTCTCTA
ATCTGATGTAAGCCACTGCTTCATTGAAGGTTTTGAATCTCTTTAAAATG
ACCGATATTCGTAAATCGTCATTCAGTCCGGCGATGAGCGAGTCCAATTT
CTGCTCATTGTTGTAATTTAATTGATACACTAGATCTTCGAGTTTTTCAA
TGTAGGCATCTAGTGATGAACATTCCTCTTGTTTGAGTTTGGCTAGTTCA
GCTTTCTTTAACATTTTGATATCAGACGACCAGAAGTAGTTTAGCAATAT
CTCTTTTATCAGCTTGTATGAAGGCTTCACGTCTGCTGGTAGCGCTCTGT
AATAGTGCATCGCGTGACCTTGTAAGCCATATGCTGTTAGAATGTTTAAA
CGTTCTTTGGAGCTCCACTTGCCAATGGTTGCTATGCTTTCGAAACTTTC
GAAATagcttttgatattttcattacTGGTTCCATTGAATTGCGGTATAT
CACCCAAGGTCATTTGGATTACGTTCATCTTGAAGATGCTAGTCATTGCT
TGCTTGTCTTCGCTTTGATCGACACTGTCGTTTTAGCAAGTTGCATGTTG
AATGATTTATAAGTAGTCGGAATGTCTTACCTTCAGATGTTATATTCCTC
TTGCCTAGTTTCCTTTACTTATTTATCTTTCGattcaaatcacaaaatct
aaatcaaaattttctgcaCAATGTTAGGTATTATTTTACTTGAATCAATT
GCAACCAATGCTTGGTTACGGCAAAGGTTCACTACGTTCAAGTTTGTTGA
ATAATTGATACCGAGA Run BLAST on NCBI protein sequence of TCONS_00043660-protein >TCONS_00043660-protein ID=TCONS_00043660-protein|Name=TCONS_00043660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MTSIFKMNVIQMTLGDIPQFNGTSNENIKSYFESFESIATIGKWSSKERL
NILTAYGLQGHAMHYYRALPADVKPSYKLIKEILLNYFWSSDIKMLKKAE
LAKLKQEECSSLDAYIEKLEDLVYQLNYNNEQKLDSLIAGLNDDLRISVI
LKRFKTFNEAVAYIRLENAIKPNDNVNSAKLFKELNEKIDKLAAGACTVQ
SSGATPRRVSLNEYTGERDLDEQVSEVIEQKLRMIMPQTINTLGRPKF Run BLAST on NCBI transcript from alignment at sc0004443:1402..2417 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043660 ID=TCONS_00043660|Name=TCONS_00043660|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at sc0004443:1402..2417 (Clytia hemisphaerica)
TCTCGGTATCAATTATTCAACAAACTTGAACGTAGTGAACCTTTGCCGTA
ACCAAGCATTGGTTGCAATTGATTCAAGTAAAATAATACCTAACATTGtg
cagaaaattttgatttagattttgtgatttgaatCGAAAGATAAATAAGT
AAAGGAAACTAGGCAAGAGGAATATAACATCTGAAGGTAAGACATTCCGA
CTACTTATAAATCATTCAACATGCAACTTGCTAAAACGACAGTGTCGATC
AAAGCGAAGACAAGCAAGCAATGACTAGCATCTTCAAGATGAACGTAATC
CAAATGACCTTGGGTGATATACCGCAATTCAATGGAACCAgtaatgaaaa
tatcaaaagctATTTCGAAAGTTTCGAAAGCATAGCAACCATTGGCAAGT
GGAGCTCCAAAGAACGTTTAAACATTCTAACAGCATATGGCTTACAAGGT
CACGCGATGCACTATTACAGAGCGCTACCAGCAGACGTGAAGCCTTCATA
CAAGCTGATAAAAGAGATATTGCTAAACTACTTCTGGTCGTCTGATATCA
AAATGTTAAAGAAAGCTGAACTAGCCAAACTCAAACAAGAGGAATGTTCA
TCACTAGATGCCTACATTGAAAAACTCGAAGATCTAGTGTATCAATTAAA
TTACAACAATGAGCAGAAATTGGACTCGCTCATCGCCGGACTGAATGACG
ATTTACGAATATCGGTCATTTTAAAGAGATTCAAAACCTTCAATGAAGCA
GTGGCTTACATCAGATTAGAGAACGCGATCAAGCCGAATGACAATGTGAA
CTCCGCCAAACTGTTCAAAGAGCTGAACGAAAAGATCGACAAATTAGCAG
CTGGCGCGTGTACTGTCCAATCTTCCGGTGCAACACCAAGACGAGTGTCA
TTAAATGAGTACACTGGTGAAAGAGATCTCGATGAACAAGTATCCGAGGT
GATCGAACAAAAGTTACGAATGATAATGCCTCAAACAATCAATACGCTTG
GCCGACCAAAATTTNN Coding sequence (CDS) from alignment at sc0004443:1402..2417 >TCONS_00043660 ID=TCONS_00043660|Name=TCONS_00043660|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0004443:1402..2417 (Clytia hemisphaerica)
ATGACTAGCATCTTCAAGATGAACGTAATCCAAATGACCTTGGGTGATAT
ACCGCAATTCAATGGAACCAgtaatgaaaatatcaaaagctATTTCGAAA
GTTTCGAAAGCATAGCAACCATTGGCAAGTGGAGCTCCAAAGAACGTTTA
AACATTCTAACAGCATATGGCTTACAAGGTCACGCGATGCACTATTACAG
AGCGCTACCAGCAGACGTGAAGCCTTCATACAAGCTGATAAAAGAGATAT
TGCTAAACTACTTCTGGTCGTCTGATATCAAAATGTTAAAGAAAGCTGAA
CTAGCCAAACTCAAACAAGAGGAATGTTCATCACTAGATGCCTACATTGA
AAAACTCGAAGATCTAGTGTATCAATTAAATTACAACAATGAGCAGAAAT
TGGACTCGCTCATCGCCGGACTGAATGACGATTTACGAATATCGGTCATT
TTAAAGAGATTCAAAACCTTCAATGAAGCAGTGGCTTACATCAGATTAGA
GAACGCGATCAAGCCGAATGACAATGTGAACTCCGCCAAACTGTTCAAAG
AGCTGAACGAAAAGATCGACAAATTAGCAGCTGGCGCGTGTACTGTCCAA
TCTTCCGGTGCAACACCAAGACGAGTGTCATTAAATGAGTACACTGGTGA
AAGAGATCTCGATGAACAAGTATCCGAGGTGATCGAACAAAAGTTACGAA
TGATAATGCCTCAAACAATCAATACGCTTGGCCGACCAAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043660-exon-sc0004443-1491911889:1402..2417 | TCONS_00043660-exon-sc0004443-1491911889:1402..2417 | Clytia hemisphaerica | exon |
| TCONS_00043660-exon-sc0004443-1510915933:1402..2417 | TCONS_00043660-exon-sc0004443-1510915933:1402..2417 | Clytia hemisphaerica | exon |
| TCONS_00043660-exon-sc0004443-1575043694:1402..2417 | TCONS_00043660-exon-sc0004443-1575043694:1402..2417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004443 | supercontig | sc0004443:1402..2417 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005162 | Retrotrans_gag_dom |
Blast
The following BLAST results are available for this feature:
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