TCONS_00043653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043653
Unique NameTCONS_00043653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043653 ID=TCONS_00043653|Name=TCONS_00043653|organism=Clytia hemisphaerica|type=transcript|length=218bp
GTGCATAACAAAGTGCAACATTCGCCTTACATGTTCaattccacaataat
ttataatTGTAATTTCGGTCAGTCGAGGGTTCATCATATTGATGATAAAA
TATATATAGATAAAACTAAAAAACAGGGGCGTTAATaatgtatgtaatat
taattcataatTTATTTATCTTCAATTCTTACGAATACAAAATTGGCTTT
GTTGCTTCTATACCAANN
Run BLAST on NCBI

transcript from alignment at sc0004437:6699..6916

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043653 ID=TCONS_00043653|Name=TCONS_00043653|organism=Clytia hemisphaerica|type=transcript|length=218bp|location=Sequence derived from alignment at sc0004437:6699..6916 (Clytia hemisphaerica)
NNTTGGTATAGAAGCAACAAAGCCAATTTTGTATTCGTAAGAATTGAAGA
TAAATAAattatgaattaatattacatacattATTAACGCCCCTGTTTTT
TAGTTTTATCTATATATATTTTATCATCAATATGATGAACCCTCGACTGA
CCGAAATTACAattataaattattgtggaattGAACATGTAAGGCGAATG
TTGCACTTTGTTATGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027337XLOC_027337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043653-exon-sc0004437-1491911889:6699..6916TCONS_00043653-exon-sc0004437-1491911889:6699..6916Clytia hemisphaericaexon
TCONS_00043653-exon-sc0004437-1510915933:6699..6916TCONS_00043653-exon-sc0004437-1510915933:6699..6916Clytia hemisphaericaexon
TCONS_00043653-exon-sc0004437-1575043694:6699..6916TCONS_00043653-exon-sc0004437-1575043694:6699..6916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004437supercontigsc0004437:6699..6916 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55223	2.48883	4.33465	1.41359	1.72091	9.51921	14.7658	18.4314	7.5275	6.66002	2.58575	6.79908	7.63833	5.28832	11.5025	11.6644	7.66379	13.7465	6.78269	9.93663	6.1691	5.41633	2.92634	3.9907	0	0	17.4981	5.60232	8.49832	11.5446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top