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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043651 ID=TCONS_00043651|Name=TCONS_00043651|organism=Clytia hemisphaerica|type=transcript|length=1109bp
AGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGC
ACCTCATTTAACCAAAGCTCGATTCCACGGCTCACCTCGTGAAATGCAAC
GATTCACGCCTTACCCATCACCACCTCCACCCACAGTGCCCAGCGAATGT
CATAGAGGCGTTGACCGCCCTTGTTACATCGACGAATACTGCACTAAGAA
ATCTTTCGTATATCCTCCATCAGCCAGCATGCGCCATGAATACATCTCAC
ACTCAAATCCAGTTTTTCAgtccaaaacaaaagaaccagTCGATCTAAAT
AACAACAAGGCGACAACAAAAGGtccaaaatctccacattattCACCAGT
TGGTCGGATCTCACCGCAATCAAATAACGACCTATCTTCACCTTCATCGT
ACGGTCAACAGCGATCACCATTCTTGGATCGTCGCTCTCCCTCCTACATT
GACCACCATCGTAGATCTCCATACAGCGAAAGACGATCTCCTATTTATCT
AGAGAGACGTTCTCCACCATCCTTCGATTCAAAACACTCTCCAATTCCTG
ACAGATTTACCAAAGAAGGCACATCGCCTACACCGGGAGTAACATCACCG
AAAGACACTTCTAAAACAGACTCACATGCTAATACTCCATCTATCGAAAT
GCTTGCACGATTATTCCCACGACATCAAACAACCACTTTAAAAAACGTCC
TAAGCAACTGTAATAATGATCCTGTACGTGCAATTGAAGAAATTTTGGAC
AGAGTGCCAGCTGAAGataataacaacaacaataGCATCAATCATACTAC
ATCACTTCCACCTGTCAAAAACACTTACTCAGCAAAACGAAATGAACCAa
ttattgattataaacatgGCAGTAATGACGATCTATCAAATCTAGCAAAA
GCATTTGATATCCCAGTATCTGAGGAGAAAATTAGAAGTCCGAAAGTTGT
ACACTGGTAACATAGAAAATCCTCTTGTAAAATAAAATACTGTTCAGCCT
GAAATATTATGTATTTTTTTGTCTGTAAATACGCAACTCAATTGTAAATG
ATTAAATTAtctaatttatgaaaaatataatttggcTTCACAAGCTGTAT
GTAAATAAT Run BLAST on NCBI protein sequence of TCONS_00043651-protein >TCONS_00043651-protein ID=TCONS_00043651-protein|Name=TCONS_00043651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
RKPIFFKEPPSAFQMWAPHLTKARFHGSPREMQRFTPYPSPPPPTVPSEC
HRGVDRPCYIDEYCTKKSFVYPPSASMRHEYISHSNPVFQSKTKEPVDLN
NNKATTKGPKSPHYSPVGRISPQSNNDLSSPSSYGQQRSPFLDRRSPSYI
DHHRRSPYSERRSPIYLERRSPPSFDSKHSPIPDRFTKEGTSPTPGVTSP
KDTSKTDSHANTPSIEMLARLFPRHQTTTLKNVLSNCNNDPVRAIEEILD
RVPAEDNNNNNSINHTTSLPPVKNTYSAKRNEPIIDYKHGSNDDLSNLAK
AFDIPVSEEKIRSPKVVHW Run BLAST on NCBI transcript from alignment at sc0004434:5554..6947- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043651 ID=TCONS_00043651|Name=TCONS_00043651|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at sc0004434:5554..6947- (Clytia hemisphaerica)
AGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGC
ACCTCATTTAACCAAAGGTACTAACAATTGTATTTAAATTTGTCCGCAAT
GAGTTTTTTGTATCTAAATTAGATTCAGAAGTGAATATCGTCACTCCAAG
ATAATTTTCGACAACTGAGACCCCTTAAATATACGTGAAATTGANTATCG
TCGCTCCAAGATAATTTTCGACAACTGAGACCCCTTAAATATACGTGAAA
TTGACTTAAATTATTTTTCAAGTCAAGGCTCTCGCTGATTAACCAACTCT
TATGATTCGCATAAATCAATCAATAACCAATACTATGATCCTAATATTAC
AGCTCGATTCCACGGCTCACCTCGTGAAATGCAACGATTCACGCCTTACC
CATCACCACCTCCACCCACAGTGCCCAGCGAATGTCATAGAGGCGTTGAC
CGCCCTTGTTACATCGACGAATACTGCACTAAGAAATCTTTCGTATATCC
TCCATCAGCCAGCATGCGCCATGAATACATCTCACACTCAAATCCAGTTT
TTCAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACAAGGCGACA
ACAAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGGATCTCACC
GCAATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCAACAGCGAT
CACCATTCTTGGATCGTCGCTCTCCCTCCTACATTGACCACCATCGTAGA
TCTCCATACAGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCC
ACCATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAG
AAGGCACATCGCCTACACCGGGAGTAACATCACCGAAAGACACTTCTAAA
ACAGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCACGATTATT
CCCACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGTAATA
ATGATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAA
GATAATAACAACAACAATAGCATCAATCATACTACATCACTTCCACCTGT
CAAAAACACTTACTCAGCAAAACGAAATGAACCAATTATTGATTATAAAC
ATGGCAGTAATGACGATCTATCAAATCTAGCAAAAGCATTTGATATCCCA
GTATCTGAGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGGTAACATAG
AAAATCCTCTTGTAAAATAAAATACTGTTCAGCCTGAAATATTATGTATT
TTTTTGTCTGTAAATACGCAACTCAATTGTAAATGATTAAATTATCTAAT
TTATGAAAAATATAATTTGGCTTCACAAGCTGTATGTAAATAAT Coding sequence (CDS) from alignment at sc0004434:5554..6947- >TCONS_00043651 ID=TCONS_00043651|Name=TCONS_00043651|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0004434:5554..6947- (Clytia hemisphaerica)
CTCGATTCCACGGCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCA
TCACCACCTCCACCCACAGTGCCCAGCGAATGTCATAGAGGCGTTGACCG
CCCTTGTTACATCGACGAATACTGCACTAAGAAATCTTTCGTATATCCTC
CATCAGCCAGCATGCGCCATGAATACATCTCACACTCAAATCCAGTTTTT
CAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACAAGGCGACAAC
AAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGGATCTCACCGC
AATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCAACAGCGATCA
CCATTCTTGGATCGTCGCTCTCCCTCCTACATTGACCACCATCGTAGATC
TCCATACAGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCAC
CATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGAA
GGCACATCGCCTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAAC
AGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCACGATTATTCC
CACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGTAATAAT
GATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAGA
TAATAACAACAACAATAGCATCAATCATACTACATCACTTCCACCTGTCA
AAAACACTTACTCAGCAAAACGAAATGAACCAATTATTGATTATAAACAT
GGCAGTAATGACGATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGT
ATCTGAGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGGTAAAGAAAAC
CAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCAT
TTAACCAAAGCTCGATTCCACGGCTCACCTCGTGAAATGCAACGATTCAC
GCCTTACCCATCACCACCTCCACCCACAGTGCCCAGCGAATGTCATAGAG
GCGTTGACCGCCCTTGTTACATCGACGAATACTGCACTAAGAAATCTTTC
GTATATCCTCCATCAGCCAGCATGCGCCATGAATACATCTCACACTCAAA
TCCAGTTTTTCAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACA
AGGCGACAACAAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGG
ATCTCACCGCAATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCA
ACAGCGATCACCATTCTTGGATCGTCGCTCTCCCTCCTACATTGACCACC
ATCGTAGATCTCCATACAGCGAAAGACGATCTCCTATTTATCTAGAGAGA
CGTTCTCCACCATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATT
TACCAAAGAAGGCACATCGCCTACACCGGGAGTAACATCACCGAAAGACA
CTTCTAAAACAGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCA
CGATTATTCCCACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAA
CTGTAATAATGATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGC
CAGCTGAAGATAATAACAACAACAATAGCATCAATCATACTACATCACTT
CCACCTGTCAAAAACACTTACTCAGCAAAACGAAATGAACCAATTATTGA
TTATAAACATGGCAGTAATGACGATCTATCAAATCTAGCAAAAGCATTTG
ATATCCCAGTATCTGAGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGG
TAAAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTG
GGCACCTCATTTAACCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043651-exon-sc0004434-1575043694:6881..6947 | TCONS_00043651-exon-sc0004434-1575043694:6881..6947 | Clytia hemisphaerica | exon |
| TCONS_00043651-exon-sc0004434-1575043694:5554..6595 | TCONS_00043651-exon-sc0004434-1575043694:5554..6595 | Clytia hemisphaerica | exon |
| TCONS_00043651-exon-sc0004434-1510915933:6881..6947 | TCONS_00043651-exon-sc0004434-1510915933:6881..6947 | Clytia hemisphaerica | exon |
| TCONS_00043651-exon-sc0004434-1510915933:5554..6595 | TCONS_00043651-exon-sc0004434-1510915933:5554..6595 | Clytia hemisphaerica | exon |
| TCONS_00043651-exon-sc0004434-1491911889:6881..6947 | TCONS_00043651-exon-sc0004434-1491911889:6881..6947 | Clytia hemisphaerica | exon |
| TCONS_00043651-exon-sc0004434-1491911889:5554..6595 | TCONS_00043651-exon-sc0004434-1491911889:5554..6595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004434 | supercontig | sc0004434:5554..6947 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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