|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043644 ID=TCONS_00043644|Name=TCONS_00043644|organism=Clytia hemisphaerica|type=transcript|length=935bp
CACACCAGTTATAAAGTATTTTTGCCTGTGGGGCAATAAATTTATTGAGA
TTATCATGCAAAATTTCTATGATGTTATGTGAAGGTgggggctattttcc
ttagcGTCGCCCTTaaaaatgctgggggctggactcctctgcacactatg
tagTGAGAGTTTATTAAGGGGGTCTTCCTATTTAAAGGGGTATTTTGACC
TCTCTATATGTACATTGTAATATTACTTCAGAAATGTTGGATGGTCATTG
CCCACGCAATGTACACAAATTCAAATCATGGACTGCCGAAGAATGGAAGA
TTTTTGCGTTCCCTGTGGCTGAAGTTGTTTTCGCTGATAATTCCTTTGTT
GATGATGAAGAATACCATCTCATATGGTTGACGGCAAGGATCGTTGAACT
TCTATTCCACCATAGATCAGGATTGAGAGAAAAAGAATTGGAAGACTTGA
CAGCAATTTGCTGGAGAAGACTAATACTTTTAGAGGAGAACGTTGGAAAA
GAAGAATGTGTCATTACAGCACACAACTCTATCCACATGACAGATGATAT
AAAGAGATTTGGTCATTGTGATAACACTTGGTGCTTTGCTCCAGAAAGAG
TGGTGAAGCGGTAAATATAGTTATTTTATAGGAATGGTAACATCTATCAT
TGTGGAATTTCCCCTTACTTGATAAagatacacattttttacaggGGACT
CTGTCTTtagaaagttttgaaattgtGATAATTTATCATGAAAAGTTGAA
TTGGTATTAGTTTTACCAATTATTAGCCAGTTTTGTCCCATTggaggaaa
tttaatttggtgcAGATTTTGGATTAACCCGCCAAATCTGATAAAGTTAA
CATTCATTCGCTCACTGCTTTTgtagtttgagcactcttgCCTGAGCTTG
TTGAATTCATTTTGTCCCCCAGCTCATggactaca Run BLAST on NCBI protein sequence of TCONS_00043644-protein >TCONS_00043644-protein ID=TCONS_00043644-protein|Name=TCONS_00043644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MLDGHCPRNVHKFKSWTAEEWKIFAFPVAEVVFADNSFVDDEEYHLIWLT
ARIVELLFHHRSGLREKELEDLTAICWRRLILLEENVGKEECVITAHNSI
HMTDDIKRFGHCDNTWCFAPERVVKR Run BLAST on NCBI transcript from alignment at sc0004428:5058..5992 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043644 ID=TCONS_00043644|Name=TCONS_00043644|organism=Clytia hemisphaerica|type=transcript|length=935bp|location=Sequence derived from alignment at sc0004428:5058..5992 (Clytia hemisphaerica)
tgtagtccATGAGCTGGGGGACAAAATGAATTCAACAAGCTCAGGcaaga
gtgctcaaactacAAAAGCAGTGAGCGAATGAATGTTAACTTTATCAGAT
TTGGCGGGTTAATCCAAAATCTgcaccaaattaaatttcctccAATGGGA
CAAAACTGGCTAATAATTGGTAAAACTAATACCAATTCAACTTTTCATGA
TAAATTATCacaatttcaaaactttctaAAGACAGAGTCCcctgtaaaaa
atgtgtatctTTATCAAGTAAGGGGAAATTCCACAATGATAGATGTTACC
ATTCCTATAAAATAACTATATTTACCGCTTCACCACTCTTTCTGGAGCAA
AGCACCAAGTGTTATCACAATGACCAAATCTCTTTATATCATCTGTCATG
TGGATAGAGTTGTGTGCTGTAATGACACATTCTTCTTTTCCAACGTTCTC
CTCTAAAAGTATTAGTCTTCTCCAGCAAATTGCTGTCAAGTCTTCCAATT
CTTTTTCTCTCAATCCTGATCTATGGTGGAATAGAAGTTCAACGATCCTT
GCCGTCAACCATATGAGATGGTATTCTTCATCATCAACAAAGGAATTATC
AGCGAAAACAACTTCAGCCACAGGGAACGCAAAAATCTTCCATTCTTCGG
CAGTCCATGATTTGAATTTGTGTACATTGCGTGGGCAATGACCATCCAAC
ATTTCTGAAGTAATATTACAATGTACATATAGAGAGGTCAAAATACCCCT
TTAAATAGGAAGACCCCCTTAATAAACTCTCActacatagtgtgcagagg
agtccagcccccagcatttttAAGGGCGACgctaaggaaaatagcccccA
CCTTCACATAACATCATAGAAATTTTGCATGATAATCTCAATAAATTTAT
TGCCCCACAGGCAAAAATACTTTATAACTGGTGTG Coding sequence (CDS) from alignment at sc0004428:5058..5992 >TCONS_00043644 ID=TCONS_00043644|Name=TCONS_00043644|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0004428:5058..5992 (Clytia hemisphaerica)
TTACCGCTTCACCACTCTTTCTGGAGCAAAGCACCAAGTGTTATCACAAT
GACCAAATCTCTTTATATCATCTGTCATGTGGATAGAGTTGTGTGCTGTA
ATGACACATTCTTCTTTTCCAACGTTCTCCTCTAAAAGTATTAGTCTTCT
CCAGCAAATTGCTGTCAAGTCTTCCAATTCTTTTTCTCTCAATCCTGATC
TATGGTGGAATAGAAGTTCAACGATCCTTGCCGTCAACCATATGAGATGG
TATTCTTCATCATCAACAAAGGAATTATCAGCGAAAACAACTTCAGCCAC
AGGGAACGCAAAAATCTTCCATTCTTCGGCAGTCCATGATTTGAATTTGT
GTACATTGCGTGGGCAATGACCATCCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043644-exon-sc0004428-1491911889:5058..5992 | TCONS_00043644-exon-sc0004428-1491911889:5058..5992 | Clytia hemisphaerica | exon |
| TCONS_00043644-exon-sc0004428-1510915933:5058..5992 | TCONS_00043644-exon-sc0004428-1510915933:5058..5992 | Clytia hemisphaerica | exon |
| TCONS_00043644-exon-sc0004428-1575043694:5058..5992 | TCONS_00043644-exon-sc0004428-1575043694:5058..5992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004428 | supercontig | sc0004428:5058..5992 . |
Blast
The following BLAST results are available for this feature:
|
