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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043626 ID=TCONS_00043626|Name=TCONS_00043626|organism=Clytia hemisphaerica|type=transcript|length=892bp
GTGAAAGTGTTTCTTTTGATTACGCGCTTGTAACTTTGACTTTGAATAAT
AAGACCATGGAAGCAGatccttttgaaagaaaatatatcttttttatgAC
AATAGTAATGTTTTAAAATAGCTTCAACAGTTTGACAACAATTTACAACA
CCCTGATTTCCTACACAGTAAATTCCAGGTGAAATTTTTTCTCCCAGCTT
TTGGGTGCTTTGATGGCATTTAACAGTCATTTTATTGTATAGAACGAAAC
CAACAGTACCAGGGGTTAGTGATTGTACAATATCTGGAATTTTATGTTGT
ATTATACAATTTGTAACAATTTGAATATTAACGTTCTGGGTGCCATGGTA
GAGATTTTTATAATCTCCGTTGTAATCTTCATACCAAAAAGCTGACTGGG
CCCATAGAGGTCCATGTTGTTTAACAGAAAAAACCATATGGAGGAGATTA
TGCACATTGTATGTTTGATATCGGTATCCATACAATCTAGGAATTTTGCA
GCAGAAATGACGCAACATCTTATCTGCATTTTCAAGATCAATAGGGGAGA
TAGAATCTTTCAGCAACAAATAAATTGATTCTACCAAAAGAATATAGTGC
TGGAAATACTCATCTGGAAGAAAATTGTATAAAATTGGAGCGGAATGATC
ATGTTGATGCTTTTGAATCACCAGTCAGAAAAAAGAAACATCCTAGCAAA
GGAGGAAAGGCCCCAAGATCCCATTTTCCTAATGCTGAAACATCACTAAA
ATCACCAAGAACGCCGGTAAGAAATCAATCAAAAGCCGCAAGATCGCGTC
CATCGCCAAAATTGGTTCCAAAGAGTCCCAGAAAGCCACTAAGTGCTACT
AAACCAAAACCTTACCGCTATGCTGTGAATAAAGTGTGTAGT Run BLAST on NCBI protein sequence of TCONS_00043626-protein >TCONS_00043626-protein ID=TCONS_00043626-protein|Name=TCONS_00043626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MLRHFCCKIPRLYGYRYQTYNVHNLLHMVFSVKQHGPLWAQSAFWYEDYN
GDYKNLYHGTQNVNIQIVTNCIIQHKIPDIVQSLTPGTVGFVLYNKMTVK
CHQSTQKLGEKISPGIYCVGNQGVVNCCQTVEAILKHYYCHKKDIFSFKR
ICFHGLIIQSQSYKRVIKRNTF Run BLAST on NCBI transcript from alignment at sc0004407:2940..3831 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043626 ID=TCONS_00043626|Name=TCONS_00043626|organism=Clytia hemisphaerica|type=transcript|length=892bp|location=Sequence derived from alignment at sc0004407:2940..3831 (Clytia hemisphaerica)
ACTACACACTTTATTCACAGCATAGCGGTAAGGTTTTGGTTTAGTAGCAC
TTAGTGGCTTTCTGGGACTCTTTGGAACCAATTTTGGCGATGGACGCGAT
CTTGCGGCTTTTGATTGATTTCTTACCGGCGTTCTTGGTGATTTTAGTGA
TGTTTCAGCATTAGGAAAATGGGATCTTGGGGCCTTTCCTCCTTTGCTAG
GATGTTTCTTTTTTCTGACTGGTGATTCAAAAGCATCAACATGATCATTC
CGCTCCAATTTTATACAATTTTCTTCCAGATGAGTATTTCCAGCACTATA
TTCTTTTGGTAGAATCAATTTATTTGTTGCTGAAAGATTCTATCTCCCCT
ATTGATCTTGAAAATGCAGATAAGATGTTGCGTCATTTCTGCTGCAAAAT
TCCTAGATTGTATGGATACCGATATCAAACATACAATGTGCATAATCTCC
TCCATATGGTTTTTTCTGTTAAACAACATGGACCTCTATGGGCCCAGTCA
GCTTTTTGGTATGAAGATTACAACGGAGATTATAAAAATCTCTACCATGG
CACCCAGAACGTTAATATTCAAATTGTTACAAATTGTATAATACAACATA
AAATTCCAGATATTGTACAATCACTAACCCCTGGTACTGTTGGTTTCGTT
CTATACAATAAAATGACTGTTAAATGCCATCAAAGCACCCAAAAGCTGGG
AGAAAAAATTTCACCTGGAATTTACTGTGTAGGAAATCAGGGTGTTGTAA
ATTGTTGTCAAACTGTTGAAGCTATTTTAAAACATTACTATTGTcataaa
aaagatatattttctttcaaaaggatCTGCTTCCATGGTCTTATTATTCA
AAGTCAAAGTTACAAGCGCGTAATCAAAAGAAACACTTTCAC Coding sequence (CDS) from alignment at sc0004407:2940..3831 >TCONS_00043626 ID=TCONS_00043626|Name=TCONS_00043626|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0004407:2940..3831 (Clytia hemisphaerica)
ATGTTGCGTCATTTCTGCTGCAAAATTCCTAGATTGTATGGATACCGATA
TCAAACATACAATGTGCATAATCTCCTCCATATGGTTTTTTCTGTTAAAC
AACATGGACCTCTATGGGCCCAGTCAGCTTTTTGGTATGAAGATTACAAC
GGAGATTATAAAAATCTCTACCATGGCACCCAGAACGTTAATATTCAAAT
TGTTACAAATTGTATAATACAACATAAAATTCCAGATATTGTACAATCAC
TAACCCCTGGTACTGTTGGTTTCGTTCTATACAATAAAATGACTGTTAAA
TGCCATCAAAGCACCCAAAAGCTGGGAGAAAAAATTTCACCTGGAATTTA
CTGTGTAGGAAATCAGGGTGTTGTAAATTGTTGTCAAACTGTTGAAGCTA
TTTTAAAACATTACTATTGTcataaaaaagatatattttctttcaaaagg
atCTGCTTCCATGGTCTTATTATTCAAAGTCAAAGTTACAAGCGCGTAAT
CAAAAGAAACACTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043626-exon-sc0004407-1491911889:2940..3831 | TCONS_00043626-exon-sc0004407-1491911889:2940..3831 | Clytia hemisphaerica | exon |
| TCONS_00043626-exon-sc0004407-1510915933:2940..3831 | TCONS_00043626-exon-sc0004407-1510915933:2940..3831 | Clytia hemisphaerica | exon |
| TCONS_00043626-exon-sc0004407-1575043694:2940..3831 | TCONS_00043626-exon-sc0004407-1575043694:2940..3831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004407 | supercontig | sc0004407:2940..3831 . |
Blast
The following BLAST results are available for this feature:
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