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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043625 ID=TCONS_00043625|Name=TCONS_00043625|organism=Clytia hemisphaerica|type=transcript|length=886bp
AATACCAAAATTACCATCATCAAAAAACGGATCAAATGTTTCTTTAATGT
GATTTGTGACATATTCAATGCGGTCGAAGGAGATATCGTGAACCTCAACA
ATGCTAGAGTCGCTTGGCATAGCATTTAAAGATGGTGATGGATCGATGCC
AAAAATACTATCATCTGTAGGACTCTCCAGAACCATACGAACACCTCTTT
GAGAGGATCTGTTTTCGTCCATCATTCCCATTAACCAAAGCTGATACGgt
gattgatttttttctgttgaGAGCTGGTGATGGTTCCAGCCCTCCTTGAA
ATTGTCTAAAGATTGTTGAATCCTTGGCACATAAATAAATTGCAAAGCAA
AGATATCCATTAAATTATCTCTCACTAAAAGGGAATGCTCTTCCATATAT
TTAAACAAATCTATAAAGTGGCTAAGTACACAATGTGTTGTGTCATAATG
TAAGCGCTCGATTCGCTGGTTATGTACAGATGGGCCTTGAATGTAGGCAC
CATCGTATCCCTGCTTCTCCCTCATGAAATTTAGTATGCCAGTGTTCTCA
CCACCTTTGTCTCCTCGAACTCGTGCAGGCAATCCAAACTCCTTCACTCC
TTGTAAGAATCCTAGTAATGTGGTGCTTGAATGATTATTTGTAGCACAGA
GTAAGGAAGTTATCATTCGTGAAAATCCATCAATGCACGCATGAATGACT
ATTCCCCAGTGAATCATTTTGTGTAATCCATCATTGTGCCAGAGACTATT
TGGCCCTGGCACACTGTAGATACATCGAGGATTTTTCTGTAACCATCTGT
TGATTGCATTTACTGGGTCAACTCTATGAATTGAATCTCGAATCCTTTGT
CTTTGTAGGTGATAGCTTTTACCTCTTAAAAAACCA Run BLAST on NCBI protein sequence of TCONS_00043625-protein >TCONS_00043625-protein ID=TCONS_00043625-protein|Name=TCONS_00043625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
GFLRGKSYHLQRQRIRDSIHRVDPVNAINRWLQKNPRCIYSVPGPNSLWH
NDGLHKMIHWGIVIHACIDGFSRMITSLLCATNNHSSTTLLGFLQGVKEF
GLPARVRGDKGGENTGILNFMREKQGYDGAYIQGPSVHNQRIERLHYDTT
HCVLSHFIDLFKYMEEHSLLVRDNLMDIFALQFIYVPRIQQSLDNFKEGW
NHHQLSTEKNQSPYQLWLMGMMDENRSSQRGVRMVLESPTDDSIFGIDPS
PSLNAMPSDSSIVEVHDISFDRIEYVTNHIKETFDPFFDDGNFGI Run BLAST on NCBI transcript from alignment at sc0004404:5336..6221 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043625 ID=TCONS_00043625|Name=TCONS_00043625|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at sc0004404:5336..6221 (Clytia hemisphaerica)
TGGTTTTTTAAGAGGTAAAAGCTATCACCTACAAAGACAAAGGATTCGAG
ATTCAATTCATAGAGTTGACCCAGTAAATGCAATCAACAGATGGTTACAG
AAAAATCCTCGATGTATCTACAGTGTGCCAGGGCCAAATAGTCTCTGGCA
CAATGATGGATTACACAAAATGATTCACTGGGGAATAGTCATTCATGCGT
GCATTGATGGATTTTCACGAATGATAACTTCCTTACTCTGTGCTACAAAT
AATCATTCAAGCACCACATTACTAGGATTCTTACAAGGAGTGAAGGAGTT
TGGATTGCCTGCACGAGTTCGAGGAGACAAAGGTGGTGAGAACACTGGCA
TACTAAATTTCATGAGGGAGAAGCAGGGATACGATGGTGCCTACATTCAA
GGCCCATCTGTACATAACCAGCGAATCGAGCGCTTACATTATGACACAAC
ACATTGTGTACTTAGCCACTTTATAGATTTGTTTAAATATATGGAAGAGC
ATTCCCTTTTAGTGAGAGATAATTTAATGGATATCTTTGCTTTGCAATTT
ATTTATGTGCCAAGGATTCAACAATCTTTAGACAATTTCAAGGAGGGCTG
GAACCATCACCAGCTCtcaacagaaaaaaatcaatcacCGTATCAGCTTT
GGTTAATGGGAATGATGGACGAAAACAGATCCTCTCAAAGAGGTGTTCGT
ATGGTTCTGGAGAGTCCTACAGATGATAGTATTTTTGGCATCGATCCATC
ACCATCTTTAAATGCTATGCCAAGCGACTCTAGCATTGTTGAGGTTCACG
ATATCTCCTTCGACCGCATTGAATATGTCACAAATCACATTAAAGAAACA
TTTGATCCGTTTTTTGATGATGGTAATTTTGGTATT Coding sequence (CDS) from alignment at sc0004404:5336..6221 >TCONS_00043625 ID=TCONS_00043625|Name=TCONS_00043625|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at sc0004404:5336..6221 (Clytia hemisphaerica)
GGTTTTTTAAGAGGTAAAAGCTATCACCTACAAAGACAAAGGATTCGAGA
TTCAATTCATAGAGTTGACCCAGTAAATGCAATCAACAGATGGTTACAGA
AAAATCCTCGATGTATCTACAGTGTGCCAGGGCCAAATAGTCTCTGGCAC
AATGATGGATTACACAAAATGATTCACTGGGGAATAGTCATTCATGCGTG
CATTGATGGATTTTCACGAATGATAACTTCCTTACTCTGTGCTACAAATA
ATCATTCAAGCACCACATTACTAGGATTCTTACAAGGAGTGAAGGAGTTT
GGATTGCCTGCACGAGTTCGAGGAGACAAAGGTGGTGAGAACACTGGCAT
ACTAAATTTCATGAGGGAGAAGCAGGGATACGATGGTGCCTACATTCAAG
GCCCATCTGTACATAACCAGCGAATCGAGCGCTTACATTATGACACAACA
CATTGTGTACTTAGCCACTTTATAGATTTGTTTAAATATATGGAAGAGCA
TTCCCTTTTAGTGAGAGATAATTTAATGGATATCTTTGCTTTGCAATTTA
TTTATGTGCCAAGGATTCAACAATCTTTAGACAATTTCAAGGAGGGCTGG
AACCATCACCAGCTCtcaacagaaaaaaatcaatcacCGTATCAGCTTTG
GTTAATGGGAATGATGGACGAAAACAGATCCTCTCAAAGAGGTGTTCGTA
TGGTTCTGGAGAGTCCTACAGATGATAGTATTTTTGGCATCGATCCATCA
CCATCTTTAAATGCTATGCCAAGCGACTCTAGCATTGTTGAGGTTCACGA
TATCTCCTTCGACCGCATTGAATATGTCACAAATCACATTAAAGAAACAT
TTGATCCGTTTTTTGATGATGGTAATTTTGGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043625-exon-sc0004404-1491911889:5336..6221 | TCONS_00043625-exon-sc0004404-1491911889:5336..6221 | Clytia hemisphaerica | exon |
| TCONS_00043625-exon-sc0004404-1510915933:5336..6221 | TCONS_00043625-exon-sc0004404-1510915933:5336..6221 | Clytia hemisphaerica | exon |
| TCONS_00043625-exon-sc0004404-1575043694:5336..6221 | TCONS_00043625-exon-sc0004404-1575043694:5336..6221 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004404 | supercontig | sc0004404:5336..6221 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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