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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043623 ID=TCONS_00043623|Name=TCONS_00043623|organism=Clytia hemisphaerica|type=transcript|length=443bp
TTAGTCTTTCAGCTACCTTCAGACGAAGTGCTTTGAAAGCACGAGTGAAG
GAGGAGAAAGAGGCGAAGAAAGCACAACTAGACGCTCGCCATGAATATCT
TCTTGGAAATATTTCCGATGCACTTAATGTCGATTACAATGAAATTGTGG
AACATATCATTGAAGGAACACAGATCGAAACGATCACCAGTTTCTTTCGA
GAAAACGGATCAAGATccagtttgatttttttctatcaaCAAATGGAAGC
TACTAATGATGGAGtgGATCACATGCGTCTTGGACACGGTGGCAATCAAC
TGgtcaacaaaaccaaacataaATTATTTCTGACTGATGGATTGGCAGAA
AAATTGACTGGATTCTGTTTGTATTTCGCTAAGatcaacaaaacaaaaga
aatcactGCACAAAATATACATAATGTAAGTAAGTTGGATCAG Run BLAST on NCBI transcript from alignment at sc0004401:1404..5183+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043623 ID=TCONS_00043623|Name=TCONS_00043623|organism=Clytia hemisphaerica|type=transcript|length=3780bp|location=Sequence derived from alignment at sc0004401:1404..5183+ (Clytia hemisphaerica)
TTAGTCTTTCAGCTACCTTCAGACGAAGTGCTTTGAAAGTAAGATTAGTA
CAAtcatctctctgtaattcgagtcTCTATAATTCGTATTTTTTTTTAAC
GGTTCCTTCATCAGCTGGAAAGTCGTTTAAAATACTCCATGTAATACGAA
TTTTCCTATAACTCGAAAAGAATCCTCAATTACTTGAAGATCACaagagt
caactgtatatataaaactccagctcatctgATGGTGTTTTgcagaaaaa
ttaattttttgaattatttctgAATGTTTGATTCGTATAAAAGTAATAGT
ACAGCCACTAACTGAAATACGTATAGCTTGAAGTCCAGATTACCGCcggc
tatctacccgaaggaaGGTAGGGgtgggcgccactctttctccctggatt
gctccacttacccttgtgATGCCTTGATCCTTATTATGATATTAACTTAC
ATAATACATTaggagaaaaacttttttagtcTTCCCTAAACGTAATTTAT
TATATTCGATAAATCAtcgacaaaaaagaaaactaaCTTACAGTATTATT
ACCACAAAGTGCGTCATGCCGACCCAATCTTCAGGTATTTTTAATGTATC
ATTGGTTTTGCTTTCAACTAGTTGTTGAGAATATAAgatttattattata
aaaacaGTTTATTTCCGTTCAACAGCTTCAGGTCTCTTGATGATAGATAT
GGTCtcatccactgacctttatgtatccctggaccaagttactcaatgtc
ggccaagcaaaatattatgatcggagtttctttgaaattggtacccgcgt
agagagcgctagatctagtttcgcttgtacactaatgatgtagcgccgCT
TGTCGTTAGGCAAAGCTTCAAACATTACCATGGCTTCTTTGTGAGTAccg
actttcaaaaaaacttcgattaaagatggcggatatagcttggtccagga
ttatataaaggtcagtggtctcATCATATGTTTTGGCTGTACTGAACCTC
TTGTACAATATTATTTAAACTCTAAAGGCAGTATCTgcaataaaagttaa
aaaaaatcgaatacaaatataacataactagttaatttatttttctcaat
GGTTGagaattacatgtttttttataagaacatccaaaatttttgaagcc
tttagatgttcttaactttttcagttttaagcctaaaaatgtttttaaca
tgtttttattttcaccattttgtgaccatttttactcatattcctaagaa
atcgggtattttcgagtccgcaaagccttaaaacgttcttaacttgttct
taacattttggccatcgaagccttatgttcttatatagtttgttcttata
aaaaaacttgtagtaCTCAAGCTCAAATGAAAATGCCAGACCTAATTAAA
ACTGCTAGAACAGAATAACATGAGAGAGGGGGAACTTTAATTCTTTGCGA
TTGACGAATGTTGTTAGTTTATTGGACGCTTTACTTACGTCTCTGTTTAT
GTGTTGTTTTGCTCTATAACTTTGGTGAGGTCGCCATCAAGATTTACTTC
GTTTCTTCAAGTCTTTTGAAATTTGTCTTTCGAAATGCCACATTCAAGGG
GCTGGAAGATTTTAAACCAGAAACTTCATGAAGTATGTTTTGTTTTCTGG
Ttcctatacacgttttttttaagaaacacacttttaagaaacacgaggct
cagaatccctaaaaactaagaaacgtctaagaaacatgctgaggttgaga
atgagaaaataacattttttaaatcgtttttttttaagaaccttccaatc
aaaacaattttttttttctttgcatgaaaaataggctgattatgattata
aacaatagaattacatggaaacgaggccgggctgtatgttttaattttta
taagtgATTTCACCGTGAACATAAACAGTCATAAACATTgatagaaaaaa
gcttttgagctcaaattttcagcatgcacttgtctttataggaggaatac
aaatatatagttttcaatatgGTTTGAAGACCTTCCAAAAATACCCaaca
attcgggaaaggtgtattactttctctaattcgaagacgATTCTTGGTCC
ctcgaagatcgaattagagagagtcaactgcaCATTTCTAACAGTTTAAA
CTTCTTTCACAACGGGTTAAACTTCTTACTACAGGCACGAGTGAAGGAGG
AGAAAGAGGCGAAGAAAGCACAACTAGACGCTCGCCATGAATATCTTCTT
GGAAATATTTCCGATGCACTTAATGTCGATTACAATGAAATTGTGGAACA
TATCATTGAAGGAACACAGGTTCGTGATaccttgattttattttttttca
atcctgTTGAAGCATTATCTCTATTTCATGCAAGTCAAATTATACCACAT
CTCTTTTAAActctttatttattatttattttatgtcagtttttttcttt
gtagCTTATCATTATCAGGTACTCTTTTTCGTCTGGATATTTCCGGACTG
TTCCGGATTCTTTTTCTTTCGATTACCGATTACCGAACCAGCGTCTCTTT
AAAGCTACAGATTAAGGAAAAAAAGACTGAGTGAGTTCATCCTTTGCACA
TTTTTGGCAACATAATGAAGTTGAAAACCTATAATCTGGAACAACTGATG
GCAGTCAACTTTCATTAATTCGAACTCGAGAGGGTTGCCCCTCGACAGga
actgagaattagttcgatttatcaaagattcgaatagtagtAAGTCGAAT
TTTAGTCCActgtatttattttctttaatttctttgtTTGGTTTTTCAGA
TCGAAACGATCACCAGTTTCTTTCGAGAAAACGGATCAAGATccagtttg
atttttttctatcaaCAAATGGAAGCTACTAATGATGGAGGTTAGTAGAT
TTTGATCACTGATCTCTATTTGACTGGATCGGGCTTCTCAAATGACAGAG
GAAGCGTGTCCAGTTTTAGAGCTGAATTGTCCGCCATCTTTTTTTTGATT
CGGCTCGTTAACATCGCGAttcgaatattttgaaattcaaacgttcgaaa
atctgaTGTAAACATGCGAAATCAGCCGTTACaagaattttggatgttct
tataaacaaaaaaaacaacgtttaCCTAGAAAAAAATCTATCATGGTAAT
TCGAACAGATTCGAACGTGGTTTTGGTAGCTGAGGACCAAGATATTCTAA
CCCCGGGAGGCACTTGGCAAAAAAGGGTACGTGGATGAGCTGAGCGTCGA
GGTACTTTTCTCACATctacgagtcccaggtaggatCACAAAAACGCAAA
AGTAAAAAAGGAAGTCCCtggtagggtacctttttgggggaatttgggaa
aaaagagGAAGATTTTGtgaaacttttcgaatttaagcCATCATTCaggg
tcatttttttcaaaaaacgatTCCCACGTAGAGGGTTCATTTTTTCGGAC
CTCTGTGTCACACCCCTTCGGTTGGAAAGGGTAGTATCCCCTGGGATTCT
AACACCCGTAATGATTTCTTAAATTAAAAAGTTGTTCAgatttttggtct
ttttttaaaagtatttctTGTGGtgagttttttgttgtttttttttcata
gtgGATCACATGCGTCTTGGACACGGTGGCAATCAACTGgtcaacaaaac
caaacataaATTATTTCTGACTGATGGATTGGCAGAAAAATTGACTGGAT
TCTGTTTGTATTTCGCTAAGatcaacaaaacaaaagaaatcactGCACAA
AATATACATAATGTAAGTAAGTTGGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043623-exon-sc0004401-1491911889:1404..1441 | TCONS_00043623-exon-sc0004401-1491911889:1404..1441 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1510915933:1404..1441 | TCONS_00043623-exon-sc0004401-1510915933:1404..1441 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1575043694:1404..1441 | TCONS_00043623-exon-sc0004401-1575043694:1404..1441 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1491911889:3588..3722 | TCONS_00043623-exon-sc0004401-1491911889:3588..3722 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1510915933:3588..3722 | TCONS_00043623-exon-sc0004401-1510915933:3588..3722 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1575043694:3588..3722 | TCONS_00043623-exon-sc0004401-1575043694:3588..3722 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1491911889:4203..4293 | TCONS_00043623-exon-sc0004401-1491911889:4203..4293 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1510915933:4203..4293 | TCONS_00043623-exon-sc0004401-1510915933:4203..4293 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1575043694:4203..4293 | TCONS_00043623-exon-sc0004401-1575043694:4203..4293 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1491911889:5005..5183 | TCONS_00043623-exon-sc0004401-1491911889:5005..5183 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1510915933:5005..5183 | TCONS_00043623-exon-sc0004401-1510915933:5005..5183 | Clytia hemisphaerica | exon |
| TCONS_00043623-exon-sc0004401-1575043694:5005..5183 | TCONS_00043623-exon-sc0004401-1575043694:5005..5183 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004401 | supercontig | sc0004401:1404..5183 + |
Blast
BLAST of TCONS_00043623 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 77.7962 bits (190), Expect = 1.260e-16 Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 3
Query: 78 LDARHEYLLGNISDALNVDYNEIVEHIIEGTQIETITSFFRENGSRSSLIFFYQQMEATNDGVDHMRLGH-GGNQLVNK--TKHKLFLTDGLAEKLTGFCLYFAKINKTKEITAQNIH 422
LDARH YL ++ L+++ E+ + I+EG QIE I F G R L+F+YQ +E G +LG GG LV+ K K+F+T+G LTG C++F + + +K IT NIH
Sbjct: 33 LDARHNYLFAIVASCLDLNKTEVEDAILEGNQIERIDQLFAVGGLR-HLMFYYQDVEEAETG----QLGSLGGVNLVSGKIKKPKVFVTEGNDVALTGVCVFFIRTDPSKAITPDNIH 145
The following BLAST results are available for this feature:
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