TCONS_00043606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043606
Unique NameTCONS_00043606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1112

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043606 ID=TCONS_00043606|Name=TCONS_00043606|organism=Clytia hemisphaerica|type=transcript|length=1112bp
TTTACTTTTCGATGGTCAGTTTTGTTTGTCGATGGTCAATTTTATAAGTC
AATGGTCGATAAATAGGATCGGTCGAAGGGGAAGTCAATGATCGAGAAAG
GAGTCGATgattgaaaaaaggaaaaaaaagagtcATTGATCGAAATAAAA
CAATGCTGTCGCAAAAGAACTCAATGGTCGAGGTAGTCAACGATCGATCG
ACCTGCCCGCACGACTTGCCCGCGCGATATGCCCGCTCGACATGCCCGCG
CGGGTAAGACACGCGACAGGCGGAATTGGGCGCGCGAACTTTTTCTATCA
AAGTCAGTAAATTATACAGAAGGCGATATTCGGTAATTAAATCGGGTCTT
GGTTTTTGACATCTTGCTCACATGTTGTGGTTTGTTTTTGGAAGGAAGGA
AGGGGAAATCAGGCAAGAAAATCCAGTTGTTTGTTGTGGAGGAGGGACAA
GAAAGAAGTAATGGATGAAGACAAAGGGAGTACGTCAAAAGATGAGCTAT
CCTGCTCCTACTATATTCAAAGATCTATGGCCCTATTACAGAGGGCAACA
ATTGAAGCAAATAAAGATAAAGAAGGAACTTCTTCTCAAAGTACCACAAA
CAGAAGTAACCCAAGCCAAAGCCCTTTTGTCCGACAAGCAGTAACTTCTT
CTTCTCAAAGTACCACAAACAGAAGTAACCCAGGCCAAAGCCCTTTTGTC
CGACAGCTGGATTTACCATCGATGATGGAATTCAGACGACAATTTCCTGG
TCTGTCAAAAccaaaatcaggaaaagaaatgcaaaaaaagtttttgccaa
aaagatCAAAACCTTATGAGAGATTTGTTCCCAAAAAGGCAAAGCCGGCA
TCACCTTGGTCGCACAACTTTGTCTGTTTGGCAGGCACTAATTCACCAAC
TACTCCAAATGCAGAAGACCTGACAGAATTAAACTTAGCAGGATTAGGCA
AGAAAAGGGTCGTTTTCACTGACAAGAATGGTGATCATGAGCATGTGAGA
TATATCCTTGAAGAGCATTATCCAAAGTTAGTGttgttcaatttttaaat
aAGATAAATCAAAGAtgctaaagtctatttcaaattagttcATCACTGAT
TGAAtctaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00043606-protein

>TCONS_00043606-protein ID=TCONS_00043606-protein|Name=TCONS_00043606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MDEDKGSTSKDELSCSYYIQRSMALLQRATIEANKDKEGTSSQSTTNRSN
PSQSPFVRQAVTSSSQSTTNRSNPGQSPFVRQLDLPSMMEFRRQFPGLSK
PKSGKEMQKKFLPKRSKPYERFVPKKAKPASPWSHNFVCLAGTNSPTTPN
AEDLTELNLAGLGKKRVVFTDKNGDHEHVRYILEEHYPKLVLFNF
Run BLAST on NCBI

transcript from alignment at sc0004390:434..5438-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043606 ID=TCONS_00043606|Name=TCONS_00043606|organism=Clytia hemisphaerica|type=transcript|length=5005bp|location=Sequence derived from alignment at sc0004390:434..5438- (Clytia hemisphaerica)
TTTACTTTTCGATGGTCAGTTTTGTTTGTCGATGGTCAATTTTATAAGTC
AATGGTCGATAAATAGGATCGGTCGAAGGGGAAGTCAATGATCGAGAAAG
GAGTCGATGATTGAAAAAAGGAAAAAAAAGAGTCATTGATCGAAATAAAA
CAATGCTGTCGCAAAAGAACTCAATGGTCGAGGTAGTCAACGATCGATCG
ACCTGCCCGCACGACTTGCCCGCGCGATATGCCCGCTCGACATGCCCGCG
CGGGTAAGACACGCGACAGGCGGAATTGGGCGCGCGAACTTTTTCTATCA
AAGTCAGTAAATTATACAGAAGGCGATATTCGGTAATTAAATCGGGTCTT
GGTTTTTGACATCTTGCTCACATGTTGTGGTTTGTTTTTGGAAGGAAGGA
AGGGGAAATCAGGCAAGAAAATCCAGTTGTTTGTTGTGGAGGAGGGACAA
GAAAGAAGTAATGGATGAAGACAAAGGGAGTACGTCAAAAGATGAGCTAT
CCTGCTCCTACTATATTCAAAGATCTATGGCCCTATTACAGAGGGCAACA
ATTGAAGCAAATAAAGATAAAGAAGGTAACACCAACTTATTTTAAAAGGG
AATAAGATAATTTTTTATATTTAGCTAGCTCAGAGATACCTTTTATGGCT
GTTTATGGTCCTTAGAAACACCTCCAGAATTCTTTGACCCTGGCTGTAAG
TGAAAAAATTGAATTTTTCAAAAAATTGGAAAGGCTGTTCAATATTGTTA
CAATTTTGTCGGGAACAGGACAAATTTTTGGGTGGGAAGCCTGTGGAAAA
ATTTGAAAATAGAAAACCCCCCTATTAAAGGGGGGGGTTTCAGGGGGTAA
CCGATTCCGCAACTCTGCCAATTTTTTCTCCAATTTCCGTCAAACCGTCT
TAAATTGAACCAAAATTCCGTCACCGAAAATTGCTTTGAAATTCAATTTT
TTTGTCGAAAATTCCGCAAATTTTGAATATCTTTTACCAATTCCGAAATT
CCGCAAATTTTTTTGCTAAATTCCGTTTTTCCGCACTAAAATTGTCTAAT
TTTCCGTCTCCGTCAGAGAACACAGTTTCCTTAATTCCGTCTAAATCTTC
CCCAAATTCCGCCACTCCGTCCGAAAAAAGGGCAGATTCCGCTCCTCCGC
CAACAGTGAAACCCCCCCCCCCATTAAAGTGTGATGAAACTATACTTTTT
TTAAACTGGACCCCTTGAGGTAGAGGCCAGTATGGATTTCGTGTAGCTAA
CGCCAAAGATCTTCAGCGTACAACTGAAAGGTTTTTGGCGAAAGGAGAAA
GTTTTTCAAAATTTTCAAAATATTGAATGAAAAATGAAAAAAAAAAAATT
GATTGAGAGAAAAAATGGAGAATTTCTCTAGGGCGGCAAAGACCATTGAG
TTTAAAGCCCGAAGGGCTAGAGTTCAATCTCTAACCTTTCTCAGGCAAGA
AAAAGTGAAGCCTTAAAAAAATGCGCCACATTTTTGACGACATATTGAAT
CTAGCAATCCTTTGTTTAAGATTGATATTTTTTTCGAAACTTTGCGCTAA
GTTTTAGTTTCAATCTGTCATTTGTGTAAAAAACCAGGCGAACCGCTCAA
GGCCGCGCAACTTTGGTAGGATTTGTTGGCTTCAAATCCTACCAAGGAGA
TTGACTTCTAGCCCTTCGGGCTTTTACTTCATTGGCAAAGACCGACCGAC
CGACCGACCGACCGACCGATCAACCTACTCACTTTTTCGACCCAACGAGG
ACACGAAATGAAGATATTTGTGATTGCCGCCTAGTGAGGAAATCAACAAC
TGCTACCTACAACAACCTTTAGAATGTTTGAAATCTGTGTATTACGTATT
ACAGATGTAGTATTATTGAAACTGTTTAAAATCATTTCAATTGACTGAAA
ATAAGTATGCATGTCTTCCCAGAGATTGTTGGCTTCAGAATAAATATTTT
TATTTGTTTTTTTTATATTGTATGGAGGAAACCCTAACTTGAATTTTGGT
ATAGAAAACTTTAAAATAAAAAAAAACTGAAAGATTTTTGACCTACCCAA
AATATCCAAATCTGTTAAAAACAGGGAGCAAAATTTTCGTTTTATTCATC
ACTTTTTCAACAGTTGAATGGCATTTGGAATTAACTTTTTTGTTCAATTG
CAGCTTTAAAATGGCTTATCTAAGATTGCTAAAGCTTTAAGTTAAGGAAC
TAAAGATTTCCATGCAAATATGAAAAGTCTTGTCAAATAGCTTGAAACCC
GAAAATCATCGAATTTTCAAATCTCAAAATACTACTATTATTGACACTTC
GACTGCCTGAGTTTAGTTTTACCTCTTCTATGGATTATTTCATATCCCAT
CCTCGTTTGTACATTTTTTTGTATTTAAACAATTTGTTAACATTTTCAGA
TTAGAAATTTTCATTTCAATGTTTTTAAACTGATGATGGTGGTCGAATGA
CACCGAAACGTCTTCAATAAATTTTGATTTTATGAAAATGAAATGAAGTC
GCTTCTGTATTTGAAATTTTTATTGAACTCATTCAGGAGAATCAATTTGA
TTATATCCCATTGTATTTTCAGACTCGTAGAAAATTAGCAGATCAATATT
TTGTCAAAATACACAAAAAAAGCCACTTTATCAAATGACTTCTGATATTA
GTGATGATCATACATTCAAATTTTGATCTTTGATTTTAATTGATTTTGAT
ATTTTGGGTAGGTCAAAATTTTCAGTTTTTTATCATAAATTTTGATCGAC
CTAATGTTTTATATACCAAGTTATATGAAGTTAGGCTTTCCTCTATACTG
TATAATAAAAAAGAAATTGTATAAAAATACTCATCCTTTAAAAAGCCCAC
AATCTCTCGAAGAAATGGTATACACGTTTTTTCTTTTATTAGAACCCAGT
TTATAAGAACATTGAGGCTGAAATTTGTCGAAAAATTAAGAACATCGTAA
GAACATGCTCAGCCTCAATTTGGGAAAAAATGACAAGAACTACAATTTTT
CCCTCTTTTCAAGCAGTTTTAAACAAACTTAGGAATGGATTTTCTAAATC
GAGAGTCAAATATTGTCAAAATTTTACCAATTTTAAGTGCTCTTTATTTT
GCATGATATTGTTGATTTAGAGTAGTCGGAAAATTTAAGAACGCATCTAA
GAACATTTCAGGCTGAAAATTGCTAAAAGTAAAAAAATAAGCACATCCAG
GCTCAGCTAAATTTTAGGTGTTCTAGTAAAAAAAAACGTGTACTTATTTT
TGGCGCACCCAGTATTTTCAAGTATTCTTAAGTTTTTAAGGTATGCCTGG
GGCTTATTGGGATTGGCAGGGTGGCCCTGTATGAAGAGAACACAAAAAAA
ACAATTACTCATTTCCACAGAAAGTTTCTTAATTATTTTTATTTGGCATG
AATATATGTTTTTTTTATAAGCAAGTGTCTGTCCCTTGATCAGGCTCAGA
TATGCTTAAGACCTTAACGAATATGCTTGCTATGCTTACGAGTCATTAAT
TTTCTAACATCATATATAATTTAATCTAAGGTGAGCTAAGGTTTGGGAAA
CAGTAGTGCAGGGCTGAGTCTCAGTCTGAGATTTTGCCGAAAAGTATAAA
CTTTGAAACTCTTTTTTAAACACAACATGATGTAATAAGTACATCAAATC
TATAAATTATATGAAAAAAAGTTATACAAGGGTGGTTAAGTTTGAGATAT
TCCCAGTTTAGACTCCATTAGCAACTATATTTCAGGCTTGCTAATTATGC
TTAAAATCTGAGCCTTCATATGCCTATACAAAAGATGTAAATTAGATTCT
ACTCTTAATTTAACTAGGTCTAGTGCTTTCTTTCTGAAAATTGGAGTGTA
TTTCTTCGATTAGACTAATATTTTGTTATGCTTCGACAGAAAATCTCCTA
TTTTGATTTGTGTGTTTCACTCACCCTTTCTCAAAAATAAAAGGTTATCA
AAGGTGCATTGAACTTTTTTTCTTGGGAAGCCCCTGTTTGAATGTTAGCC
AAAGTTTCATCAAAAAAAAATTTAGGTATAAATTTCGAAAACTGGGATAA
AAACTGATATCTAATTCAAATACCAAAATTTCAGTCACTTTCAAGTTTTC
CTAGAAAATCGTAATAAAACACTTTCCACGCACAATTCAGATTTCTGTAA
TTTGAAACTTTTCATAACTGGAACATTTTTTTTTACCCAATCAATAGTGG
ACCCCCCAAAAAATTTGGGGTACCTTAAAATAAAAAATGTCCCTAATTTA
CAAATTTAGGGGGTACCTGATTTGTTTGGGTTCACACCTCATTTTTCTTA
CTTTCTAATATGTAACCATATTACTGTTTTCAGGAACTTCTTCTCAAAGT
ACCACAAACAGAAGTAACCCAAGCCAAAGCCCTTTTGTCCAACAAGCAGT
AACTTCTTCTTCTCAAAGTACCACAAACAGAAATAACCCAAGCCAAAGCC
CTTTTGTCCAACAAGCAGTAACTTCTTCTCAAAGTACCACAAACAGAAGT
AACCCAGGCCAAAGCCCTTTTGTCCGACAAGCAGTAACTTCTTCTTCTCA
AAGTACCACAAACAGAAGTAACCCAGGCCAAAGCCCTTTTGTCCGACAGC
TGGATTTACCATCGATGATGGAATTCAGACGACAATTTCCTGGTCTGTCA
AAACCAAAATCAGGAAAAGAAATGCAAAAAAAGTTTTTGCCAAAAAGATC
AAAACCTTATGAGAGATTTGTTCCCAAAAAGGCAAAGCCGGCATCACCTT
GGTCGCACAACTTTGTCTGTTTGGCAGGCACTAATTCACCAACTACTCCA
AATGCAGAAGACCTGACAGAATTAAACTTAGCAGGATTAGGCAAGAAAAG
GGTCGTTTTCACTGACAAGAATGGTGATCATGAGCATGTGAGATATATCC
TTGAAGAGCATTATCCAAAGTTAGTGTTGTTCAATTTTTAAATAAGATAA
ATCAAAGATGCTAAAGTCTATTTCAAATTAGTTCATCACTGATTGAATCT
AAAAA

Coding sequence (CDS) from alignment at sc0004390:434..5438-

>TCONS_00043606 ID=TCONS_00043606|Name=TCONS_00043606|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0004390:434..5438- (Clytia hemisphaerica)
GCCAAAGCCCTTTTGTCCGACAAGCAGTAACTTCTTCTTCTCAAAGTACC
ACAAACAGAAGTAACCCAGGCCAAAGCCCTTTTGTCCGACAGCTGGATTT
ACCATCGATGATGGAATTCAGACGACAATTTCCTGGTCTGTCAAAACCAA
AATCAGGAAAAGAAATGCAAAAAAAGTTTTTGCCAAAAAGATCAAAACCT
TATGAGAGATTTGTTCCCAAAAAGGCAAAGCCGGCATCACCTTGGTCGCA
CAACTTTGTCTGTTTGGCAGGCACTAATTCACCAACTACTCCAAATGCAG
AAGACCTGACAGAATTAAACTTAGCAGGATTAGGCAAGAAAAGGGTCGTT
TTCACTGACAAGAATGGTGATCATGAGCATGTGAGATATATCCTTGAAGA
GCATTATCCAAAGTTAGTGTTGTTCAATTTTTAAGAACTTCTTCTCAAAG
TACCACAAACAGAAGTAACCCAAATGGATGAAGACAAAGGGAGTACGTCA
AAAGATGAGCTATCCTGCTCCTACTATATTCAAAGATCTATGGCCCTATT
ACAGAGGGCAACAATTGAAGCAAATAAAGATAAAGAAGGCCAAAGCCCTT
TTGTCCGACAAGCAGTAACTTCTTCTTCTCAAAGTACCACAAACAGAAGT
AACCCAGGCCAAAGCCCTTTTGTCCGACAGCTGGATTTACCATCGATGAT
GGAATTCAGACGACAATTTCCTGGTCTGTCAAAACCAAAATCAGGAAAAG
AAATGCAAAAAAAGTTTTTGCCAAAAAGATCAAAACCTTATGAGAGATTT
GTTCCCAAAAAGGCAAAGCCGGCATCACCTTGGTCGCACAACTTTGTCTG
TTTGGCAGGCACTAATTCACCAACTACTCCAAATGCAGAAGACCTGACAG
AATTAAACTTAGCAGGATTAGGCAAGAAAAGGGTCGTTTTCACTGACAAG
AATGGTGATCATGAGCATGTGAGATATATCCTTGAAGAGCATTATCCAAA
GTTAGTGTTGTTCAATTTTTAAGAACTTCTTCTCAAAGTACCACAAACAG
AAGTAACCCAAATGGATGAAGACAAAGGGAGTACGTCAAAAGATGAGCTA
TCCTGCTCCTACTATATTCAAAGATCTATGGCCCTATTACAGAGGGCAAC
AATTGAAGCAAATAAAGATAAAGAAGGCCAAAGCCCTTTTGTCCGACAAG
CAGTAACTTCTTCTTCTCAAAGTACCACAAACAGAAGTAACCCAGGCCAA
AGCCCTTTTGTCCGACAGCTGGATTTACCATCGATGATGGAATTCAGACG
ACAATTTCCTGGTCTGTCAAAACCAAAATCAGGAAAAGAAATGCAAAAAA
AGTTTTTGCCAAAAAGATCAAAACCTTATGAGAGATTTGTTCCCAAAAAG
GCAAAGCCGGCATCACCTTGGTCGCACAACTTTGTCTGTTTGGCAGGCAC
TAATTCACCAACTACTCCAAATGCAGAAGACCTGACAGAATTAAACTTAG
CAGGATTAGGCAAGAAAAGGGTCGTTTTCACTGACAAGAATGGTGATCAT
GAGCATGTGAGATATATCCTTGAAGAGCATTATCCAAAGTTAGTGTTGTT
CAATTTTTAAGAACTTCTTCTCAAAGTACCACAAACAGAAGTAACCCAAA
TGGATGAAGACAAAGGGAGTACGTCAAAAGATGAGCTATCCTGCTCCTAC
TATATTCAAAGATCTATGGCCCTATTACAGAGGGCAACAATTGAAGCAAA
TAAAGATAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027293XLOC_027293Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043606-proteinTCONS_00043606-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043606-exon-sc0004390-1575043694:4864..5438TCONS_00043606-exon-sc0004390-1575043694:4864..5438Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1575043694:1067..1105TCONS_00043606-exon-sc0004390-1575043694:1067..1105Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1575043694:434..931TCONS_00043606-exon-sc0004390-1575043694:434..931Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1510915933:4864..5438TCONS_00043606-exon-sc0004390-1510915933:4864..5438Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1510915933:1067..1105TCONS_00043606-exon-sc0004390-1510915933:1067..1105Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1510915933:434..931TCONS_00043606-exon-sc0004390-1510915933:434..931Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1491911889:4864..5438TCONS_00043606-exon-sc0004390-1491911889:4864..5438Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1491911889:1067..1105TCONS_00043606-exon-sc0004390-1491911889:1067..1105Clytia hemisphaericaexon
TCONS_00043606-exon-sc0004390-1491911889:434..931TCONS_00043606-exon-sc0004390-1491911889:434..931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004390supercontigsc0004390:434..5438 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.46153	0.217082	0.311393	0.0615956	7.7612	6.81347	3.35208	3.27419	2.24476	3.72329	3.75131	3.88738	1.29466	1.63388	1.04652	0.878082	0.999823	1.18818	0.678823	1.58788	1.14528	0.759299	0.30604	0.941355	0.59822	0.571487	2.52135	1.23625	0.710141	1.0845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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