TCONS_00043584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043584
Unique NameTCONS_00043584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043584 ID=TCONS_00043584|Name=TCONS_00043584|organism=Clytia hemisphaerica|type=transcript|length=273bp
tcattatttttaattttcagtttgaacaatcGTATTCACTTCAATCGAAG
TTCCAAACTGTGTCAGTTTATTTCCGTGCACAACATTCAAACAGACAGTA
CATTCACGACCGTCAACATTCAAATAAAAGTCGTTTCATCATTCAAACAA
ACGATAGAATCACAAAAACTCATCACCGTCAACATTCATGCAGAGCTGAA
TCACTCACCTGTTCATTCAAATCAATATCAACGCATGCTGCTCAGGCAGA
CAAAACGTGTCAACTACAAGGAG
Run BLAST on NCBI

transcript from alignment at sc0004365:4891..5163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043584 ID=TCONS_00043584|Name=TCONS_00043584|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0004365:4891..5163 (Clytia hemisphaerica)
CTCCTTGTAGTTGACACGTTTTGTCTGCCTGAGCAGCATGCGTTGATATT
GATTTGAATGAACAGGTGAGTGATTCAGCTCTGCATGAATGTTGACGGTG
ATGAGTTTTTGTGATTCTATCGTTTGTTTGAATGATGAAACGACTTTTAT
TTGAATGTTGACGGTCGTGAATGTACTGTCTGTTTGAATGTTGTGCACGG
AAATAAACTGACACAGTTTGGAACTTCGATTGAAGTGAATACgattgttc
aaactgaaaattaaaaataatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027271XLOC_027271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043584-exon-sc0004365-1491911889:4891..5163TCONS_00043584-exon-sc0004365-1491911889:4891..5163Clytia hemisphaericaexon
TCONS_00043584-exon-sc0004365-1510915933:4891..5163TCONS_00043584-exon-sc0004365-1510915933:4891..5163Clytia hemisphaericaexon
TCONS_00043584-exon-sc0004365-1575043694:4891..5163TCONS_00043584-exon-sc0004365-1575043694:4891..5163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004365supercontigsc0004365:4891..5163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.974684	1.7665	0	0.24144	2.93088	0.579006	2.09564	0	0.58648	4.44761	0.770177	0	1.08407	4.48589	3.14297	2.28373	1.58725	4.22492	3.71141	4.70186	5.79032	11.6123	2.7166	0	0	0	2.93322	5.89388	4.59131	9.20609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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