TCONS_00043582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043582
Unique NameTCONS_00043582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043582 ID=TCONS_00043582|Name=TCONS_00043582|organism=Clytia hemisphaerica|type=transcript|length=353bp
GCCATTCTTTGGGTCATTATAGCAAATACACAGAAACcagtcagccattt
tgtttttgcgAAATTCCTTCCTTCTGGCCAAAGTTCAAGGTTCAAAGAGC
AGAAATGCAAAGAATAATTATtctaaaatcaaaccaatcaaatttgTTGA
CATATTTCATGATAATTAGACCATAATTAACAAAATTACATGGACAAGTA
GTTCCAAATTTGGTGGCCTTCGAGTTTTGGCAGCcattttttaaaatctt
gtCGGCAACTAACGTGCGGatcaaaggaaatttatttttattgtttgaac
aatgagataattttgcataattatgcGCTTAGACGTCTTGTTTTGGTTAT
AAG
Run BLAST on NCBI

transcript from alignment at sc0004363:5994..6346

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043582 ID=TCONS_00043582|Name=TCONS_00043582|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at sc0004363:5994..6346 (Clytia hemisphaerica)
CTTATAACCAAAACAAGACGTCTAAGCgcataattatgcaaaattatctc
attgttcaaacaataaaaataaatttcctttgatCCGCACGTTAGTTGCC
GacaagattttaaaaaatgGCTGCCAAAACTCGAAGGCCACCAAATTTGG
AACTACTTGTCCATGTAATTTTGTTAATTATGGTCTAATTATCATGAAAT
ATGTCAAcaaatttgattggtttgattttagaATAATTATTCTTTGCATT
TCTGCTCTTTGAACCTTGAACTTTGGCCAGAAGGAAGGAATTTcgcaaaa
acaaaatggctgactgGTTTCTGTGTATTTGCTATAATGACCCAAAGAAT
GGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027269XLOC_027269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043582-exon-sc0004363-1491911889:5994..6346TCONS_00043582-exon-sc0004363-1491911889:5994..6346Clytia hemisphaericaexon
TCONS_00043582-exon-sc0004363-1510915933:5994..6346TCONS_00043582-exon-sc0004363-1510915933:5994..6346Clytia hemisphaericaexon
TCONS_00043582-exon-sc0004363-1575043694:5994..6346TCONS_00043582-exon-sc0004363-1575043694:5994..6346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004363supercontigsc0004363:5994..6346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.328977	0.826617	0.37187	1.22677	0.682485	1.60322	0.489086	0.363781	0.61373	1.3452	0.217224	0.606585	0.185915	0.171812	0.16787	0.458878	0.722145	0	0	0.889125	0.439894	0.41452	0.256821	0	0	2.22758	1.56093	0.432035	0.307501
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top