TCONS_00043581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043581
Unique NameTCONS_00043581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043581 ID=TCONS_00043581|Name=TCONS_00043581|organism=Clytia hemisphaerica|type=transcript|length=828bp
CTAACATTTCatatttaaatttcatttttacccTGATTTTCAGGTGTAGT
TTGCTGCAATCCTATATATCCATGATGAGGTAAATATGGTGGCGCATNAG
GCTCATTTTAATCAATAGATCAACTAACATTTCatatttaaatttcattt
ttacccTGATTTTCAGGTGTAGTTTGCTGCAATCCTATATATCCATGATG
AGGTAAATATGGTGGCGCATGTGGGTGGTATGGTGGCAGTGCATAACGAT
TGTTAAACATGTAGTCCGCTTCCCTTGCCAGGCGGTCAGAAGGGGTAACA
AAAGGTGTACTGTTAGGTGATACAGGTCCTGTTTTGAAATCTTCATGTGG
GTACACGTCTTTGGTTGCAGAATACCCTCGTTTTACCATTGGGTAATGAT
CACTATAATTTGTATGATGATAATTGTGGAAGGTTTTAGATGCATCAATT
TCATCATTCGATTCTGCTtgattgttattattttcatcCAACGTAattaa
ttcttcttttttcacaattttgctTGCTCCGTAAGATTTTTCTTCACTTG
TTGTGATTGTGCAGATTGTGGTTGGCTtgtattgattttcttttggaaag
ttGTCTTGATGAGATTCCATAATTATGATAAGTTTAGTTTAATTATCATT
AGTGATAAATACTCCATTAGTTTATAGTATAACATTACCATCAAAGTTTT
AAGTATCAATCTTCCAAATTTTCTAACATTTATCATTAAACATTGTCACA
TTTTTCATCCAGCAGTAAAAATCAAACGAGTCTACTTTTCTGTTCAGAAA
GCATTTTTTTATAGCATGAAAATAATTC
Run BLAST on NCBI

protein sequence of TCONS_00043581-protein

>TCONS_00043581-protein ID=TCONS_00043581-protein|Name=TCONS_00043581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MESHQDNFPKENQYKPTTICTITTSEEKSYGASKIVKKEELITLDENNNN
QAESNDEIDASKTFHNYHHTNYSDHYPMVKRGYSATKDVYPHEDFKTGPV
SPNSTPFVTPSDRLAREADYMFNNRYALPPYHPHAPPYLPHHGYIGLQQT
TPENQGKNEI
Run BLAST on NCBI

transcript from alignment at sc0004362:6180..7007

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043581 ID=TCONS_00043581|Name=TCONS_00043581|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0004362:6180..7007 (Clytia hemisphaerica)
GAATTATTTTCATGCTATAAAAAAATGCTTTCTGAACAGAAAAGTAGACT
CGTTTGATTTTTACTGCTGGATGAAAAATGTGACAATGTTTAATGATAAA
TGTTAGAAAATTTGGAAGATTGATACTTAAAACTTTGATGGTAATGTTAT
ACTATAAACTAATGGAGTATTTATCACTAATGATAATTAAACTAAACTTA
TCATAATTATGGAATCTCATCAAGACaactttccaaaagaaaatcaatac
aAGCCAACCACAATCTGCACAATCACAACAAGTGAAGAAAAATCTTACGG
AGCAagcaaaattgtgaaaaaagaagaattaatTACGTTGgatgaaaata
ataacaatcaAGCAGAATCGAATGATGAAATTGATGCATCTAAAACCTTC
CACAATTATCATCATACAAATTATAGTGATCATTACCCAATGGTAAAACG
AGGGTATTCTGCAACCAAAGACGTGTACCCACATGAAGATTTCAAAACAG
GACCTGTATCACCTAACAGTACACCTTTTGTTACCCCTTCTGACCGCCTG
GCAAGGGAAGCGGACTACATGTTTAACAATCGTTATGCACTGCCACCATA
CCACCCACATGCGCCACCATATTTACCTCATCATGGATATATAGGATTGC
AGCAAACTACACCTGAAAATCAgggtaaaaatgaaatttaaatatGAAAT
GTTAGTTGATCTATTGATTAAAATGAGCCTNATGCGCCACCATATTTACC
TCATCATGGATATATAGGATTGCAGCAAACTACACCTGAAAATCAgggta
aaaatgaaatttaaatatGAAATGTTAG

Coding sequence (CDS) from alignment at sc0004362:6180..7007

>TCONS_00043581 ID=TCONS_00043581|Name=TCONS_00043581|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0004362:6180..7007 (Clytia hemisphaerica)
ATGGAATCTCATCAAGACaactttccaaaagaaaatcaatacaAGCCAAC
CACAATCTGCACAATCACAACAAGTGAAGAAAAATCTTACGGAGCAagca
aaattgtgaaaaaagaagaattaatTACGTTGgatgaaaataataacaat
caAGCAGAATCGAATGATGAAATTGATGCATCTAAAACCTTCCACAATTA
TCATCATACAAATTATAGTGATCATTACCCAATGGTAAAACGAGGGTATT
CTGCAACCAAAGACGTGTACCCACATGAAGATTTCAAAACAGGACCTGTA
TCACCTAACAGTACACCTTTTGTTACCCCTTCTGACCGCCTGGCAAGGGA
AGCGGACTACATGTTTAACAATCGTTATGCACTGCCACCATACCACCCAC
ATGCGCCACCATATTTACCTCATCATGGATATATAGGATTGCAGCAAACT
ACACCTGAAAATCAgggtaaaaatgaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027268XLOC_027268Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043581-proteinTCONS_00043581-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043581-exon-sc0004362-1491911889:6180..7007TCONS_00043581-exon-sc0004362-1491911889:6180..7007Clytia hemisphaericaexon
TCONS_00043581-exon-sc0004362-1510915933:6180..7007TCONS_00043581-exon-sc0004362-1510915933:6180..7007Clytia hemisphaericaexon
TCONS_00043581-exon-sc0004362-1575043694:6180..7007TCONS_00043581-exon-sc0004362-1575043694:6180..7007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004362supercontigsc0004362:6180..7007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.41404	6.13638	2.03388	0.291275	15.0518	9.44379	20.2978	20.0792	3.82384	6.56882	6.73812	3.31548	0	0	0.0689545	0	0.381901	0.32773	0	0	0.371168	0.428553	6.1328	7.20562	0	0	0.284034	0.497434	5.57868	8.40247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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