TCONS_00043573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043573
Unique NameTCONS_00043573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043573 ID=TCONS_00043573|Name=TCONS_00043573|organism=Clytia hemisphaerica|type=transcript|length=739bp
ggcgatccaaaaagtatctgcaatctgattggttaaaaagagtacattCA
ACGGCATTCTAGTTTCCAGGTCTCTAGAGAGCTAGGTGAGATATAGCGAG
CGTGGGCGGCACAGTGAATCATTCCATAGCAAGCTGTCGTGGTAAGCGCA
CACGTGTACAACAAACCTTCTTGAACAGAAGGATTTCATTTTAAAAGAGT
ATATTTTACAATTTCTGATAAAAGAATTGTAAAACATATTCTAAATTCTT
GAAGTacaatttctttcctttttcttttagaaGTGAATCTAAATCTAGGA
ATTCTCCTCTCTGAGAAAAATGGCTGATATACAAGATATTTTAAAAGGAC
TTGAGACATCATCTCCAAGAAGAAAACGAAGTTATACTAGTTCTgactca
tcatcatcatctgacTCCGACAACAGCAGCAGTGGTTCATCGAGTTCATC
TTCATCTGATAGTTCCTCAAGCGAtcattcaaaacaaagaaaaaagagga
ggAGAAGAGAAGAACATTTGAGTGACAGTGATGCTTTATCTATTCATGCA
GGGGAAACCCCTGATAAAAATGGTAGCCAAAGTAGCTACAAAAATGACAG
CCAAAGTGCtgctgaaaagaaaaacaacgaaAGTGTTGGTAAAGAAGAAA
CTTCTCTTGACTTATACTCTAATCTCAACCTTGTGAGCACAGAAGAGAAA
AAGGGCGAAAAAATCGATGATGGTTGGGCTAAAATAATa
Run BLAST on NCBI

protein sequence of TCONS_00043573-protein

>TCONS_00043573-protein ID=TCONS_00043573-protein|Name=TCONS_00043573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MADIQDILKGLETSSPRRKRSYTSSDSSSSSDSDNSSSGSSSSSSSDSSS
SDHSKQRKKRRRREEHLSDSDALSIHAGETPDKNGSQSSYKNDSQSAAEK
KNNESVGKEETSLDLYSNLNLVSTEEKKGEKIDDGWAKII
Run BLAST on NCBI

transcript from alignment at sc0004355:6478..7216

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043573 ID=TCONS_00043573|Name=TCONS_00043573|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at sc0004355:6478..7216 (Clytia hemisphaerica)
tATTATTTTAGCCCAACCATCATCGATTTTTTCGCCCTTTTTCTCTTCTG
TGCTCACAAGGTTGAGATTAGAGTATAAGTCAAGAGAAGTTTCTTCTTTA
CCAACACTttcgttgtttttcttttcagcaGCACTTTGGCTGTCATTTTT
GTAGCTACTTTGGCTACCATTTTTATCAGGGGTTTCCCCTGCATGAATAG
ATAAAGCATCACTGTCACTCAAATGTTCTTCTCTTCTcctcctctttttt
ctttgttttgaatgaTCGCTTGAGGAACTATCAGATGAAGATGAACTCGA
TGAACCACTGCTGCTGTTGTCGGAgtcagatgatgatgatgagtcAGAAC
TAGTATAACTTCGTTTTCTTCTTGGAGATGATGTCTCAAGTCCTTTTAAA
ATATCTTGTATATCAGCCATTTTTCTCAGAGAGGAGAATTCCTAGATTTA
GATTCACttctaaaagaaaaaggaaagaaattgtACTTCAAGAATTTAGA
ATATGTTTTACAATTCTTTTATCAGAAATTGTAAAATATACTCTTTTAAA
ATGAAATCCTTCTGTTCAAGAAGGTTTGTTGTACACGTGTGCGCTTACCA
CGACAGCTTGCTATGGAATGATTCACTGTGCCGCCCACGCTCGCTATATC
TCACCTAGCTCTCTAGAGACCTGGAAACTAGAATGCCGTTGaatgtactc
tttttaaccaatcagattgcagatactttttggatcgcc

Coding sequence (CDS) from alignment at sc0004355:6478..7216

>TCONS_00043573 ID=TCONS_00043573|Name=TCONS_00043573|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0004355:6478..7216 (Clytia hemisphaerica)
tATTATTTTAGCCCAACCATCATCGATTTTTTCGCCCTTTTTCTCTTCTG
TGCTCACAAGGTTGAGATTAGAGTATAAGTCAAGAGAAGTTTCTTCTTTA
CCAACACTttcgttgtttttcttttcagcaGCACTTTGGCTGTCATTTTT
GTAGCTACTTTGGCTACCATTTTTATCAGGGGTTTCCCCTGCATGAATAG
ATAAAGCATCACTGTCACTCAAATGTTCTTCTCTTCTcctcctctttttt
ctttgttttgaatgaTCGCTTGAGGAACTATCAGATGAAGATGAACTCGA
TGAACCACTGCTGCTGTTGTCGGAgtcagatgatgatgatgagtcAGAAC
TAGTATAACTTCGTTTTCTTCTTGGAGATGATGTCTCAAGTCCTTTTAAA
ATATCTTGTATATCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027260XLOC_027260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043573-exon-sc0004355-1491911889:6478..7216TCONS_00043573-exon-sc0004355-1491911889:6478..7216Clytia hemisphaericaexon
TCONS_00043573-exon-sc0004355-1510915933:6478..7216TCONS_00043573-exon-sc0004355-1510915933:6478..7216Clytia hemisphaericaexon
TCONS_00043573-exon-sc0004355-1575043694:6478..7216TCONS_00043573-exon-sc0004355-1575043694:6478..7216Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043573-proteinTCONS_00043573-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004355supercontigsc0004355:6478..7216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00409	0.979143	0.725191	0.370753	1.21535	1.04003	1.04295	1.20854	1.24098	1.81664	0.548681	1.21781	1.08355	1.18806	0.657857	1.29685	0.818941	1.33915	1.13852	1.11692	1.22969	1.93547	0.614009	1.18622	0.473778	0.577277	1.15001	1.46936	1.14099	1.2584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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