TCONS_00043566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043566
Unique NameTCONS_00043566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043566 ID=TCONS_00043566|Name=TCONS_00043566|organism=Clytia hemisphaerica|type=transcript|length=922bp
ACACAGCCTGACAAATCATCATATTACAGACAGAAACACAaagttatcaa
aacaataaaCGGTTACGAAGCAGACCCACAACTCCCTTCAATGAACAAAC
CAACCGCACCAGTGGCCAACAGCTTTGGTAATGGTGGAGGTCCTAGTGGT
GAAGTACCAGCATCTGCTGGAATCACTAGAGAACCTGAGCAACCAAAACC
GCAGATCTACCAAACACCCGCTGGACAACCGACCAGTGAATTAAGACCAG
GCGAGGAAAAAATCGACCCACCTTTTACAGCACTTGGTCAGAAATATCCA
GAAGGGATTACAACAGAAGAACGAGATGCAACCACAATGGGAGAACATAA
ACCTGATCTCCCTGTAGCGCCTGGCCAAGAGCGCGTTTTCTTTGGTGGTA
ACGGGGAGCCAGGTCAAAGCGGTATGCCAAACACTGCCACACCAGAACAA
AGGAATTTCGAAGGTCCTCCTGGCGCTGATATTCCACCAATGTCTAGCCC
TGAGGCCTCACAACCGGACCCAAATCCGACGCAAAATGCACCAAATACAG
CTACAAGTGCCAGTGGTGGTATCAACCCGGTAGCTGGGGAGCTTAGCAAT
GCTCTAGCTGAGAATAAAGTTTCTCCTGAAGAAGCGCTACAGATGATGAA
TGATTTCGTGTCTGGCAACCAGGATATGAACAAAGCTGCCAAAAATATTG
AAGGCATGCTTGGTCAAATCGCTCATACTCGACATCACGCACCAGGAGCG
GCCGAAGGTGCCAGTGCCTCAGCACCGTCCTCGTTGACGCCAGAGCATCC
ATTACTTCAACCTCCAGCAGATGTCGCTTCTCCACTCAATGATGACACTC
ATAAGTTTGTTTCCAATCCAAACGACATAGCAGGTCTTAACACGGGATTC
AGTGACCCAAACTTGGCCATGG
Run BLAST on NCBI

protein sequence of TCONS_00043566-protein

>TCONS_00043566-protein ID=TCONS_00043566-protein|Name=TCONS_00043566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
TQPDKSSYYRQKHKVIKTINGYEADPQLPSMNKPTAPVANSFGNGGGPSG
EVPASAGITREPEQPKPQIYQTPAGQPTSELRPGEEKIDPPFTALGQKYP
EGITTEERDATTMGEHKPDLPVAPGQERVFFGGNGEPGQSGMPNTATPEQ
RNFEGPPGADIPPMSSPEASQPDPNPTQNAPNTATSASGGINPVAGELSN
ALAENKVSPEEALQMMNDFVSGNQDMNKAAKNIEGMLGQIAHTRHHAPGA
AEGASASAPSSLTPEHPLLQPPADVASPLNDDTHKFVSNPNDIAGLNTGF
SDPNLAM
Run BLAST on NCBI

transcript from alignment at sc0004352:2499..4484+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043566 ID=TCONS_00043566|Name=TCONS_00043566|organism=Clytia hemisphaerica|type=transcript|length=1986bp|location=Sequence derived from alignment at sc0004352:2499..4484+ (Clytia hemisphaerica)
ACACAGCCTGACAAATCATCATATTACAGACAGAGTAAGACGCATGCGCA
CGAAAACAACAACTAGTCTAGATTTTTAGTGGAATATTAGATCTTAGATA
TTTAGATAGAAGTTGATTATCAATTAAAATTTAATCCGggaaaatgaact
tttattgcAAGAACTGCTTGCCAATGAAGCTGGAGCTGAACTTAAAGGTT
TAACCAACTCCCATACCAGTACATTATCGGTTTTCCGATGTTTTCTGATG
GCACCAAATATTACTATCTGACGTCCATCAGTGTCTTTTAAAAACACTGG
AATACCATAGGGCGAACTTCACGGTTAACATTTATTCACATCCTAGTTTC
TCTTCTCTACTATAGAACACAaagttatcaaaacaataaaCGGTTACGAA
GCAGACCCACAACTCCCTTCAATGAACAAACCAACCGCACCAGTGGCCAA
CAGCTTTGGTAATGGTGGAGGTCCTAGTGGTGAAGTACCAGCATCTGCTG
GAATCACTAGAGAACCTGAGCAACCAAAACCGCAGATCTACCAAACACCC
GCTGGACAACCGACCAGTGAATTAAGACCAGGCGAGGAAAAAATCGACCC
ACCTTTTACAGCACGTAAGACATTATATACAAGTTACAGTCTAATTTCTA
TACAGGTATCACAGATGAGGAGCGCAACCCTCCTAAAATTTCTCTACAAA
AGATCCACTCAAAATAATCATCATTTTCCAAAAACTACAGTCTGCCTGGA
AATGTCGGGAATAAAAACTCCGCGCAGATAATggttttccattatttttt
catAGAAATCACTCATAAATTTCATTCCTCTACTTTTCCGCATTTATAGT
TGGTCAGAAATATCCAGAAGGGATTACAACAGAAGAACGAGATGCAACCA
CAATGGGAGAACATAAACCTGATCTCCCTGTAGCGCCTGGTACGTTGTGA
TTTAAACTTTTGAGTCATTCGATGTATATTTTGTTGGCTCTCAAGTATAA
GATCCGAATCCTGTTTATATCCAGCGCGTGGAACATCCCAAGTCGTCTTT
TGAGACTATCCTTCGGATAGAAGGATTTTTTAAATGATGGAGTAATATAA
TGTGCTCATTTCTCCATTTTTCAGGCCAAGAGCGCGTTTTCTTTGGTGGT
AACGGGGAGCCAGGTCAAAGCGGTATGCCAAACACTGCCACACCAGAACA
AAGGAATTTCGAAGGTCCTCCTGGCGCTGATATTCCACCAATGTCTAGCC
CTGAGGCCTCACAACCGGACCCAAATCCGACGCAAAATGCACCAAATACA
GCTACAAGTGCCAGTGGTGGTATCAACCCGGTAGCTGGGGAGCTTAGCAA
TGCTCTAGCTGAGAATAAAGTTTCTCCTGAAGAAGCGCTACAGATGATGA
ATGATTTCGTGTCTGGCAACCAGGATATGAACAAAGCTGCCAAAAATATT
GAAGGTAAGTGAAAGAAGAGTTAGGTATACAAATTCGTGAACATTCTGTC
ACAAGTTGGGTCTGCTGGCCTTCGTGGGCCCCCTTCAAAAAcgtttcaaa
attcaatctaCTTTCAAACCAATCGGATGCTGTCACGCCCCACGAAATGT
TACGGATCCTAAGTTTTAGCCTGCTAGATTATCTAGAATAAAAGGGCAGG
TCAGGCTCAGCGAGTTTGTCGAGATCaaacattctttcaaaaatatttct
gaaTTTAAGAAGATCACTTGTGTTCAGAACAAATAATAAACAAATAATCA
TCAAATTTTCCTTTAAGGCATGCTTGGTCAAATCGCTCATACTCGACATC
ACGCACCAGGAGCGGCCGAAGGTGCCAGTGCCTCAGCACCGTCCTCGTTG
ACGCCAGAGCATCCATTACTTCAACCTCCAGCAGATGTCGCTTCTCCACT
CAATGATGACACTCATAAGTTTGTTTCCAATCCAAACGACATAGCAGGTC
TTAACACGGGATTCAGTGACCCAAACTTGGCCATGG

Coding sequence (CDS) from alignment at sc0004352:2499..4484+

>TCONS_00043566 ID=TCONS_00043566|Name=TCONS_00043566|organism=Clytia hemisphaerica|type=CDS|length=4605bp|location=Sequence derived from alignment at sc0004352:2499..4484+ (Clytia hemisphaerica)
ACACAGCCTGACAAATCATCATATTACAGACAGAAACACAaagttatcaa
aacaataaaCGGTTACGAAGCAGACCCACAACTCCCTTCAATGAACAAAC
CAACCGCACCAGTGGCCAACAGCTTTGGTAATGGTGGAGGTCCTAGTGGT
GAAGTACCAGCATCTGCTGGAATCACTAGAGAACCTGAGCAACCAAAACC
GCAGATCTACCAAACACCCGCTGGACAACCGACCAGTGAATTAAGACCAG
GCGAGGAAAAAATCGACCCACCTTTTACAGCACTTGGTCAGAAATATCCA
GAAGGGATTACAACAGAAGAACGAGATGCAACCACAATGGGAGAACATAA
ACCTGATCTCCCTGTAGCGCCTGGCCAAGAGCGCGTTTTCTTTGGTGGTA
ACGGGGAGCCAGGTCAAAGCGGTATGCCAAACACTGCCACACCAGAACAA
AGGAATTTCGAAGGTCCTCCTGGCGCTGATATTCCACCAATGTCTAGCCC
TGAGGCCTCACAACCGGACCCAAATCCGACGCAAAATGCACCAAATACAG
CTACAAGTGCCAGTGGTGGTATCAACCCGGTAGCTGGGGAGCTTAGCAAT
GCTCTAGCTGAGAATAAAGTTTCTCCTGAAGAAGCGCTACAGATGATGAA
TGATTTCGTGTCTGGCAACCAGGATATGAACAAAGCTGCCAAAAATATTG
AAGGCATGCTTGGTCAAATCGCTCATACTCGACATCACGCACCAGGAGCG
GCCGAAGGTGCCAGTGCCTCAGCACCGTCCTCGTTGACGCCAGAGCATCC
ATTACTTCAACCTCCAGCAGATGTCGCTTCTCCACTCAATGATGACACTC
ATAAGTTTGTTTCCAATCCAAACGACATAGCAGGTCTTAACACGGGATTC
AGTGACCCAAACTTGGCCATGACACAGCCTGACAAATCATCATATTACAG
ACAGAAACACAaagttatcaaaacaataaaCGGTTACGAAGCAGACCCAC
AACTCCCTTCAATGAACAAACCAACCGCACCAGTGGCCAACAGCTTTGGT
AATGGTGGAGGTCCTAGTGGTGAAGTACCAGCATCTGCTGGAATCACTAG
AGAACCTGAGCAACCAAAACCGCAGATCTACCAAACACCCGCTGGACAAC
CGACCAGTGAATTAAGACCAGGCGAGGAAAAAATCGACCCACCTTTTACA
GCACTTGGTCAGAAATATCCAGAAGGGATTACAACAGAAGAACGAGATGC
AACCACAATGGGAGAACATAAACCTGATCTCCCTGTAGCGCCTGGCCAAG
AGCGCGTTTTCTTTGGTGGTAACGGGGAGCCAGGTCAAAGCGGTATGCCA
AACACTGCCACACCAGAACAAAGGAATTTCGAAGGTCCTCCTGGCGCTGA
TATTCCACCAATGTCTAGCCCTGAGGCCTCACAACCGGACCCAAATCCGA
CGCAAAATGCACCAAATACAGCTACAAGTGCCAGTGGTGGTATCAACCCG
GTAGCTGGGGAGCTTAGCAATGCTCTAGCTGAGAATAAAGTTTCTCCTGA
AGAAGCGCTACAGATGATGAATGATTTCGTGTCTGGCAACCAGGATATGA
ACAAAGCTGCCAAAAATATTGAAGGCATGCTTGGTCAAATCGCTCATACT
CGACATCACGCACCAGGAGCGGCCGAAGGTGCCAGTGCCTCAGCACCGTC
CTCGTTGACGCCAGAGCATCCATTACTTCAACCTCCAGCAGATGTCGCTT
CTCCACTCAATGATGACACTCATAAGTTTGTTTCCAATCCAAACGACATA
GCAGGTCTTAACACGGGATTCAGTGACCCAAACTTGGCCATGACACAGCC
TGACAAATCATCATATTACAGACAGAAACACAaagttatcaaaacaataa
aCGGTTACGAAGCAGACCCACAACTCCCTTCAATGAACAAACCAACCGCA
CCAGTGGCCAACAGCTTTGGTAATGGTGGAGGTCCTAGTGGTGAAGTACC
AGCATCTGCTGGAATCACTAGAGAACCTGAGCAACCAAAACCGCAGATCT
ACCAAACACCCGCTGGACAACCGACCAGTGAATTAAGACCAGGCGAGGAA
AAAATCGACCCACCTTTTACAGCACTTGGTCAGAAATATCCAGAAGGGAT
TACAACAGAAGAACGAGATGCAACCACAATGGGAGAACATAAACCTGATC
TCCCTGTAGCGCCTGGCCAAGAGCGCGTTTTCTTTGGTGGTAACGGGGAG
CCAGGTCAAAGCGGTATGCCAAACACTGCCACACCAGAACAAAGGAATTT
CGAAGGTCCTCCTGGCGCTGATATTCCACCAATGTCTAGCCCTGAGGCCT
CACAACCGGACCCAAATCCGACGCAAAATGCACCAAATACAGCTACAAGT
GCCAGTGGTGGTATCAACCCGGTAGCTGGGGAGCTTAGCAATGCTCTAGC
TGAGAATAAAGTTTCTCCTGAAGAAGCGCTACAGATGATGAATGATTTCG
TGTCTGGCAACCAGGATATGAACAAAGCTGCCAAAAATATTGAAGGCATG
CTTGGTCAAATCGCTCATACTCGACATCACGCACCAGGAGCGGCCGAAGG
TGCCAGTGCCTCAGCACCGTCCTCGTTGACGCCAGAGCATCCATTACTTC
AACCTCCAGCAGATGTCGCTTCTCCACTCAATGATGACACTCATAAGTTT
GTTTCCAATCCAAACGACATAGCAGGTCTTAACACGGGATTCAGTGACCC
AAACTTGGCCATGACACAGCCTGACAAATCATCATATTACAGACAGAAAC
ACAaagttatcaaaacaataaaCGGTTACGAAGCAGACCCACAACTCCCT
TCAATGAACAAACCAACCGCACCAGTGGCCAACAGCTTTGGTAATGGTGG
AGGTCCTAGTGGTGAAGTACCAGCATCTGCTGGAATCACTAGAGAACCTG
AGCAACCAAAACCGCAGATCTACCAAACACCCGCTGGACAACCGACCAGT
GAATTAAGACCAGGCGAGGAAAAAATCGACCCACCTTTTACAGCACTTGG
TCAGAAATATCCAGAAGGGATTACAACAGAAGAACGAGATGCAACCACAA
TGGGAGAACATAAACCTGATCTCCCTGTAGCGCCTGGCCAAGAGCGCGTT
TTCTTTGGTGGTAACGGGGAGCCAGGTCAAAGCGGTATGCCAAACACTGC
CACACCAGAACAAAGGAATTTCGAAGGTCCTCCTGGCGCTGATATTCCAC
CAATGTCTAGCCCTGAGGCCTCACAACCGGACCCAAATCCGACGCAAAAT
GCACCAAATACAGCTACAAGTGCCAGTGGTGGTATCAACCCGGTAGCTGG
GGAGCTTAGCAATGCTCTAGCTGAGAATAAAGTTTCTCCTGAAGAAGCGC
TACAGATGATGAATGATTTCGTGTCTGGCAACCAGGATATGAACAAAGCT
GCCAAAAATATTGAAGGCATGCTTGGTCAAATCGCTCATACTCGACATCA
CGCACCAGGAGCGGCCGAAGGTGCCAGTGCCTCAGCACCGTCCTCGTTGA
CGCCAGAGCATCCATTACTTCAACCTCCAGCAGATGTCGCTTCTCCACTC
AATGATGACACTCATAAGTTTGTTTCCAATCCAAACGACATAGCAGGTCT
TAACACGGGATTCAGTGACCCAAACTTGGCCATGACACAGCCTGACAAAT
CATCATATTACAGACAGAAACACAaagttatcaaaacaataaaCGGTTAC
GAAGCAGACCCACAACTCCCTTCAATGAACAAACCAACCGCACCAGTGGC
CAACAGCTTTGGTAATGGTGGAGGTCCTAGTGGTGAAGTACCAGCATCTG
CTGGAATCACTAGAGAACCTGAGCAACCAAAACCGCAGATCTACCAAACA
CCCGCTGGACAACCGACCAGTGAATTAAGACCAGGCGAGGAAAAAATCGA
CCCACCTTTTACAGCACTTGGTCAGAAATATCCAGAAGGGATTACAACAG
AAGAACGAGATGCAACCACAATGGGAGAACATAAACCTGATCTCCCTGTA
GCGCCTGGCCAAGAGCGCGTTTTCTTTGGTGGTAACGGGGAGCCAGGTCA
AAGCGGTATGCCAAACACTGCCACACCAGAACAAAGGAATTTCGAAGGTC
CTCCTGGCGCTGATATTCCACCAATGTCTAGCCCTGAGGCCTCACAACCG
GACCCAAATCCGACGCAAAATGCACCAAATACAGCTACAAGTGCCAGTGG
TGGTATCAACCCGGTAGCTGGGGAGCTTAGCAATGCTCTAGCTGAGAATA
AAGTTTCTCCTGAAGAAGCGCTACAGATGATGAATGATTTCGTGTCTGGC
AACCAGGATATGAACAAAGCTGCCAAAAATATTGAAGGCATGCTTGGTCA
AATCGCTCATACTCGACATCACGCACCAGGAGCGGCCGAAGGTGCCAGTG
CCTCAGCACCGTCCTCGTTGACGCCAGAGCATCCATTACTTCAACCTCCA
GCAGATGTCGCTTCTCCACTCAATGATGACACTCATAAGTTTGTTTCCAA
TCCAAACGACATAGCAGGTCTTAACACGGGATTCAGTGACCCAAACTTGG
CCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027253XLOC_027253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043566-proteinTCONS_00043566-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043566-exon-sc0004352-1491911889:2499..2532TCONS_00043566-exon-sc0004352-1491911889:2499..2532Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1510915933:2499..2532TCONS_00043566-exon-sc0004352-1510915933:2499..2532Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1575043694:2499..2532TCONS_00043566-exon-sc0004352-1575043694:2499..2532Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1491911889:2864..3112TCONS_00043566-exon-sc0004352-1491911889:2864..3112Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1510915933:2864..3112TCONS_00043566-exon-sc0004352-1510915933:2864..3112Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1575043694:2864..3112TCONS_00043566-exon-sc0004352-1575043694:2864..3112Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1491911889:3348..3437TCONS_00043566-exon-sc0004352-1491911889:3348..3437Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1510915933:3348..3437TCONS_00043566-exon-sc0004352-1510915933:3348..3437Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1575043694:3348..3437TCONS_00043566-exon-sc0004352-1575043694:3348..3437Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1491911889:3623..3952TCONS_00043566-exon-sc0004352-1491911889:3623..3952Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1510915933:3623..3952TCONS_00043566-exon-sc0004352-1510915933:3623..3952Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1575043694:3623..3952TCONS_00043566-exon-sc0004352-1575043694:3623..3952Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1491911889:4266..4484TCONS_00043566-exon-sc0004352-1491911889:4266..4484Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1510915933:4266..4484TCONS_00043566-exon-sc0004352-1510915933:4266..4484Clytia hemisphaericaexon
TCONS_00043566-exon-sc0004352-1575043694:4266..4484TCONS_00043566-exon-sc0004352-1575043694:4266..4484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004352supercontigsc0004352:2499..4484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.248792	0.369797	0.394373	0.275595	0	0	13.5324	16.748	4.14984	6.00527	11.4204	6.95615	27.9079	27.0727	15.3072	42.5088	22.1176	22.1527	0.105789	0.0553501	12.566	15.4516	9.46882	12.6257	24.305	29.342	2.67961	0.291262	0	0.0562685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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