TCONS_00043565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043565
Unique NameTCONS_00043565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043565 ID=TCONS_00043565|Name=TCONS_00043565|organism=Clytia hemisphaerica|type=transcript|length=185bp
ACGTTTGTGGTTCTTGGAGCTCGAAAATACACTCGGAGTCCTCTAAAATG
GATGTGAACTATCCTAACTAACGTGAACATGTAATCATGGATTCTGAACC
AAAATTCCCagattcattgttttttttgtagcCTGTAAAATTTACTTTAT
TTGCTAGACAATTCCTTAACTCGAAACCATAAATN
Run BLAST on NCBI

transcript from alignment at sc0004351:4690..4931-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043565 ID=TCONS_00043565|Name=TCONS_00043565|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at sc0004351:4690..4931- (Clytia hemisphaerica)
ACGTTTGTGGTTCTTGGAGCTCGAAAATACACTCGGAGTCCTCTAAAATG
GATGTGAACTATCCTAACTAACGTGAACATGNAATACACTCGGAGTCCTC
TAAAATGGATGTGAACTATCCTAACTAACGTGAACATGTAATCATGGATT
CTGAACCAAAATTCCCAGATTCATTGTTTTTTTTGTAGCCTGTAAAATTT
ACTTTATTTGCTAGACAATTCCTTAACTCGAAACCATAAATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027252XLOC_027252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043565-exon-sc0004351-1575043694:4854..4931TCONS_00043565-exon-sc0004351-1575043694:4854..4931Clytia hemisphaericaexon
TCONS_00043565-exon-sc0004351-1575043694:4690..4796TCONS_00043565-exon-sc0004351-1575043694:4690..4796Clytia hemisphaericaexon
TCONS_00043565-exon-sc0004351-1510915933:4854..4931TCONS_00043565-exon-sc0004351-1510915933:4854..4931Clytia hemisphaericaexon
TCONS_00043565-exon-sc0004351-1510915933:4690..4796TCONS_00043565-exon-sc0004351-1510915933:4690..4796Clytia hemisphaericaexon
TCONS_00043565-exon-sc0004351-1491911889:4854..4931TCONS_00043565-exon-sc0004351-1491911889:4854..4931Clytia hemisphaericaexon
TCONS_00043565-exon-sc0004351-1491911889:4690..4796TCONS_00043565-exon-sc0004351-1491911889:4690..4796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004351supercontigsc0004351:4690..4931 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	6.86747	6.37985	0	1.35689	0	0	0	0.620763	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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