TCONS_00043524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043524
Unique NameTCONS_00043524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043524 ID=TCONS_00043524|Name=TCONS_00043524|organism=Clytia hemisphaerica|type=transcript|length=426bp
gattttgttgaagtaaggcggcaatcaaaaatatgttgcgTTCGGGCCAA
CTGTTGATTTACAAGAAAACCTGACTCGGAAAGTCGGTAAAATCGTCGGG
TTTTTTTGGGCGCTGTTCGCAGGTTCGGATCTTTCCCATAATGGCAGGCA
CGGGCAAACGgatcatattttttttgttttCTTAACCCACATTGAGTCCC
ATTCAAGTATTTTCATGTACCTTTATTGAAATTTTCATGTCAAAATTCAG
CAGCACAGTAGGGCCAATATTCTGGGGGCCAAAAGTAAGGGCCGCTTTAA
GGTCAACACATGCGCACGCACATTTTTAGTTTGGCAAATTAAAGATGACG
CCATAAGATTCTGTTAATTGCGGACTTGATTCATCAAGATTTACTAGATC
CAACAAAATTTACTACCGACCGGCCG
Run BLAST on NCBI

transcript from alignment at sc0004321:1634..2059

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043524 ID=TCONS_00043524|Name=TCONS_00043524|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0004321:1634..2059 (Clytia hemisphaerica)
CGGCCGGTCGGTAGTAAATTTTGTTGGATCTAGTAAATCTTGATGAATCA
AGTCCGCAATTAACAGAATCTTATGGCGTCATCTTTAATTTGCCAAACTA
AAAATGTGCGTGCGCATGTGTTGACCTTAAAGCGGCCCTTACTTTTGGCC
CCCAGAATATTGGCCCTACTGTGCTGCTGAATTTTGACATGAAAATTTCA
ATAAAGGTACATGAAAATACTTGAATGGGACTCAATGTGGGTTAAGaaaa
caaaaaaaatatgatcCGTTTGCCCGTGCCTGCCATTATGGGAAAGATCC
GAACCTGCGAACAGCGCCCAAAAAAACCCGACGATTTTACCGACTTTCCG
AGTCAGGTTTTCTTGTAAATCAACAGTTGGCCCGAAcgcaacatattttt
gattgccgccttacttcaacaaaatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027212XLOC_027212Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043524-exon-sc0004321-1491911889:1634..2059TCONS_00043524-exon-sc0004321-1491911889:1634..2059Clytia hemisphaericaexon
TCONS_00043524-exon-sc0004321-1510915933:1634..2059TCONS_00043524-exon-sc0004321-1510915933:1634..2059Clytia hemisphaericaexon
TCONS_00043524-exon-sc0004321-1575043694:1634..2059TCONS_00043524-exon-sc0004321-1575043694:1634..2059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004321supercontigsc0004321:1634..2059 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.47681	0.555823	1.19633	1.08663	1.54335	2.0907	1.15818	0.962235	0.826629	0.418977	0.496918	0.587056	0.816222	0.488908	0.119592	0.225288	0.31663	0.494704	0	0	0	0.462616	0.187457	0	2.35959	2.14916	0	0.239251	0.181463	0.184882
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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