TCONS_00043492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043492
Unique NameTCONS_00043492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length137

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043492 ID=TCONS_00043492|Name=TCONS_00043492|organism=Clytia hemisphaerica|type=transcript|length=137bp
AGTTCTTGGTTTAAACCCTTGGGTTTTAAGGTTTTTAGTTTGTTGATCCA
AAAGTTCTCTCGTGatagaatggtgtttttcagctGGCTTTCATTTCCTT
CGATATTTCTTAGCTGTTCAATGATCGTAAATTTAGC
Run BLAST on NCBI

transcript from alignment at sc0004288:4019..4155

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043492 ID=TCONS_00043492|Name=TCONS_00043492|organism=Clytia hemisphaerica|type=transcript|length=137bp|location=Sequence derived from alignment at sc0004288:4019..4155 (Clytia hemisphaerica)
GCTAAATTTACGATCATTGAACAGCTAAGAAATATCGAAGGAAATGAAAG
CCagctgaaaaacaccattctatCACGAGAGAACTTTTGGATCAACAAAC
TAAAAACCTTAAAACCCAAGGGTTTAAACCAAGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027186XLOC_027186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043492-exon-sc0004288-1491911889:4019..4155TCONS_00043492-exon-sc0004288-1491911889:4019..4155Clytia hemisphaericaexon
TCONS_00043492-exon-sc0004288-1510915933:4019..4155TCONS_00043492-exon-sc0004288-1510915933:4019..4155Clytia hemisphaericaexon
TCONS_00043492-exon-sc0004288-1575043694:4019..4155TCONS_00043492-exon-sc0004288-1575043694:4019..4155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004288supercontigsc0004288:4019..4155 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top