TCONS_00043490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043490
Unique NameTCONS_00043490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043490 ID=TCONS_00043490|Name=TCONS_00043490|organism=Clytia hemisphaerica|type=transcript|length=376bp
aattttaaaataatcattcaaacttgaaacttgaaacAAGCAAGAAGAAT
CATTAGcaaaaattgctcaaaacttaatacaataaaaatgaacttaGTCA
TTGTCTTAGCAGGGATCGTTGCAGATATGGGTTTTGACTCAACTTTTTGT
GAGTGTTTTGGGACAACCACGACCACCAGCACCACCGCCATCTACCGAGA
CACTGTTACGAGAATTAAATAATTTACTGGATAATGTCGTCATATTCGAA
GCTCAGCCAGATTCAGAACTTGATTATCAACAAGCACATGACTTTTGTAA
AGCTCGAAATGCTGTTTTGGGAAAGATCTTGAATgttcaagaaaacaaaa
ttgtCAGTAACTCGCTGGCCTCTTTT
Run BLAST on NCBI

transcript from alignment at sc0004288:319..3455-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043490 ID=TCONS_00043490|Name=TCONS_00043490|organism=Clytia hemisphaerica|type=transcript|length=3137bp|location=Sequence derived from alignment at sc0004288:319..3455- (Clytia hemisphaerica)
AATTTTAAAATAATCATTCAAACTTGAAACTTGAAACAAGCAAGAAGAAT
CATTAGCAAAAATTGCTCAAAACTTAATACAATAAAAATGAACTTAGTCA
TTGTCTTAGCAGGGATCGTTGCAGGTATGTCTTTTAGATTTTAGTCTAAA
TAAGATTAGGTTTTTTCTTGTCAGGGTTACCACCGAACTGTCTTTCATAG
CTTTTTAACCCACATTTAGGGTGATGAAGTTTACTCTTCCTTAACTTAAC
CATTTTATGTTCCTAAAAAAGTCTACTCTAACTCGTGCATAAGAAAATTG
GACAAAATTAATATACCTGGTCCCTAAAGTTGTTGAAATGACTAAAACCG
AAAATAAGTGTAGCAAAAGTGTTTTTTTTATTCCAGTATGCAGTGGATTA
TCAGCACCTGATAACCCATGTCCAAACACTTTATGTAAAGGAAAATCTGA
GGGAAACTTTGCTTATGTCAACCCAACCAACAACAAACTCGTGAAGAACC
TCTTCGTCCAATGTGTCGAAGGAAATGCATATTGTCAAGCTTGTTGGCCA
CTCAGTTTGGAATTCAGTCCACGATGCAACCAATGTTTGTATCGTTCAAA
TGATGAATGTGTCAAAACTGTTCCATTCTAACCAGCCACCACTTTCCAAT
GCCCAGACAAATGTCCCAACCGTGGACCAAAATTCACCGGAAAAATTGCT
GACCCAGCTGAAAAACGACAATACGTNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCATATTATACCTATTAACCATCGGGTTAATAATTCT
CAATAACCAACTTTTACCTATTGAATATCTGCTTAATATCATGCATTTTT
AATGGAACTTTAATGAGCTCTTTTGTACATTGATGAAATCTTATTGGCTC
ATTTAAGTGATAGAAATTATCCATTCCTTCTGACATCGGTGTAAAATAAT
TTTTGGACTAAAAATGACCTGTAAACTTGGGGGAAACTTGGCAATCTTTT
ATAACCCCTTTATTTATAACTTTTCGGGCGAGCCGTGGAATTTCTTTTGA
TACATTTCATGAAAGAAATCAAAAGGTTTTAACGATCAATTACCGACAAA
TTCAACTCCTGTTTTTCTTTATACCTCCATGGTAACAGGTAAATCAAGGA
AACACATAACTGTTTCATTGATACCGAACAATCAAGGGTTATAATTGTAC
ACGTTTTTTTATAAGAACATCGTTATTAACCTTTTGAGTTTTAAGCCTAA
AATGTTCTTTATATGTTCTTATTTTCGCCATTTTTTGAGTATTTTTTGTG
TATTTTTCTAAGGAATAGGGCTTTTTAGAGTCCACAAAGCCTTAAATGTT
CTTAAGTTGCTCTTAATATTTTGCCATCGGAGCCTTATGTTCTTATATAG
TTTGTTTTTATAAAAAACGTGTAATGCATACTACAACTTATACTTTGTTT
ATGACCACGCTCCAAATGTTTCATAAATATCCTGCGCCACAGTCAACAGG
TTGATACTTTGATTTTCATCTGCATTGTACAACTATCATTTACGGTACAG
TTATGACTGACTTGAAAACTGTGTTCTTTTTTAAGATATGGGTTTTGACT
CAACTTTTTGTGAGTGTTTTGGGACAACCACGACCACCAGCACCACCGCC
ATCTACCGAGACACTGTTACGAGAATTAAATAATTTACTGGATAATGTCG
TCATATTCGAAGCTCAGCCAGATTCAGAACTTGATTATCAACAAGCACAT
GACTTTTGTAAAGCTCGAAATGCTGTTTTGGGAAAGATCTTGAATGTTCA
AGAAAACAAAATTGTCAGTAACTCGCTGGCCTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027185XLOC_027185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043490-exon-sc0004288-1575043694:3332..3455TCONS_00043490-exon-sc0004288-1575043694:3332..3455Clytia hemisphaericaexon
TCONS_00043490-exon-sc0004288-1575043694:319..570TCONS_00043490-exon-sc0004288-1575043694:319..570Clytia hemisphaericaexon
TCONS_00043490-exon-sc0004288-1510915933:3332..3455TCONS_00043490-exon-sc0004288-1510915933:3332..3455Clytia hemisphaericaexon
TCONS_00043490-exon-sc0004288-1510915933:319..570TCONS_00043490-exon-sc0004288-1510915933:319..570Clytia hemisphaericaexon
TCONS_00043490-exon-sc0004288-1491911889:3332..3455TCONS_00043490-exon-sc0004288-1491911889:3332..3455Clytia hemisphaericaexon
TCONS_00043490-exon-sc0004288-1491911889:319..570TCONS_00043490-exon-sc0004288-1491911889:319..570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004288supercontigsc0004288:319..3455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.318015	0.128709	0	0.286489	0	6.7012	7.49224	11.4495	16.0124	5.45631	6.3209	2.01096	2.46727	69.186	7.46689	9.53515	6.42434	0.798329	0	0.374358	0.54189	0	0	0.228089	0.407128	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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