TCONS_00043485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043485
Unique NameTCONS_00043485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043485 ID=TCONS_00043485|Name=TCONS_00043485|organism=Clytia hemisphaerica|type=transcript|length=427bp
taaacatttttattcgaatcgtcTGCGTCTgttcgaaatcatcaaaagta
aacAAATGCAAAAATCTAtaaagatggcttgttgttgGATCTTGgtcagt
tttgatttgttttcttgacaaattcgacaaatttgattacccccgtacct
ctttatcattgaatatccacttggttttgcaagACGATCAAAGATCATGT
TTGAAGTAGAGATGGATGGTCATGAAAATGtggaaatcgaaagtgaaagt
gactgGGATAGCGAGGGTGAAAATCCTTCTGAAAGTGAATTGGACAGTGA
CGTCGAAATCAAAAACTCACTTGCCACCTCTGCAatGGATGGATTTGGGA
ACTTGTTATCTTCAAATACAAAGAATAATGAAACCATAGATATTATAAAA
GAAATCCATTCAGCTCTTCTACTGgta
Run BLAST on NCBI

transcript from alignment at sc0004281:1211..7494-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043485 ID=TCONS_00043485|Name=TCONS_00043485|organism=Clytia hemisphaerica|type=transcript|length=6284bp|location=Sequence derived from alignment at sc0004281:1211..7494- (Clytia hemisphaerica)
TAAACATTTTTATTCGAATCGTCTGCGTCTGTTCGAAATCATCAAAAGTA
AACAAATGCAAAAATCTATAAAGATGGCTTGTTGTTGGATCTTGGTCAGT
TTTGATTTGTTTTCTTGACAAATTCGACAAATTTGATTACCCCCGTACCT
CTTTATCATTGAATATCCACTTGGTTTTGCAAGGTGAGTTTAGTTCACTT
AAAAGAGCACTTTTCCCGCCTGCGCGACCACCAAAAACTTCTCTTTATTG
ATCTTATTTGATACTTGATGGTTACTTTTAAAAGTCAAGGAATGATGAAG
ATCCTTTCTGTCATCTTTCAAACGATTTTTTTCCATTTAACAGCAAAATA
AACATTTAAAACCGAAGAACCCATAGCATCAGCCCCCCCCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGCTAAGAAATATTT
TGGCCTTTAAAGAGCCTGAGGGCTAAAATTACCAAAATATTTGGGGGGAC
CTGGATTGTTGGGGGGGACCTAGATGATCTGACTGAGACTCAGGGGGCTG
TTCAGCTAATTTTAAAAGATCTCTTATCTTACTATTAAATCAAATATAGC
TAAAAAGCAAAAGATTTGTAAACATAAATAATAATACAAGTAAAATTGAG
TTTTCATTTTCAGTACTGTACTCGCATATATCTTTTATTGACTTCTCTAC
AGGGGCGGGAGAACAATGTTTTTTTTTCCCAAGTGTTTAAGGGGACCTAG
CACAAGGCAATTTTTTGGGGGGAGCTAAATTATTGGGGGGACCTTACTTT
GTTGGGGGGACCTAGAAACCTGGCTGAAGCTATGGAACCACTGTTTAGAT
GCGTGCCGCCCGCGCGGCAATTTGATCAACTTCAGATTTTAAGTCCGTGT
TTCGGCTTCTGGTAATTTTTTTTGCTGTTCACTGCTAGGGTACACCATTT
TAAAACGGCATTTTTCGCAGTCATAGCTACCAAACCGAGAAAATTTTCGT
GGCTTTAACCCAAACCCTTTAAGGTCATTTTGATAAAATCATCGGTTTGA
AGATGTGATTTATATAGCAAATTTTGGGCCAATTTTCGCTTGGGATAGAA
GTTAAAGGTACACACAATGTAGCAAAACTGCTTCGCAAAAATAAGGGGTC
ATAGACCTCTCAGAAAAAAGCGGTTCGGAAGATATGCCATTTTTTTTGGC
TTAAAAAACAGCTCTTTCGGTAACAAATGTCTTAGGCTAAATGGGTAAGA
GCTAACGAGTCTGCTAAATGACGCGCCTTACGCGCCCACGCGCCCTCATA
TTTCTAACGCGCCTTCGCGCCTGACGCGCCTCAAAAATTTGACGCGCCCT
ATGATTTCTACGCGCCTTGAAAATTTGACGCGCCCTAGAATTTCGACGCG
CCTTGAAAATTTGACGCGCCCTAGAATTTCGCTGCCCCTTAAAAATTTGA
CGCGCCCTATGATTTTGACGCGCCTTGAAAATTTGACGCGCCCTAAGATT
TCGACACGCCTTAGGGCTTTGATGTGCCTTAAGTTTTCAACGGTTTTGAC
GGACGGAATAATGGGACACCGGTCTAATCATACATGGTTGGTATATAAAA
GAATGCCGGTGTTAGCAAAATGATCATTTCTTAAGAGATTAGCCTAAAGT
CGACCCGTTCCATTCATCGGCTGTACACTTTATGTACGCTTTATTAGTCT
ATTTCATAGAATTTGTACATGCTACACGTTATANGCAAAATGACCATTTC
TTAAGAGATTATAGCCTAAAGTCGACCCGTTCCATTTATCGGCTGTACAC
TTTATTAGTCTATTTCATAGAATTTTTGCATGCTATACGTTATATCTATT
CAATTTACAGGGGAAAATGCACAAATTTGTCCCTTCACAGAAAACCCAAC
TTTTTGTAATCATCTTTGACTTGGGAATTTTTGAAAAGGTTTCCATTGTC
GCTGTCTTTGTTAAATGTACATCTCAATTTGGAAAAGAGTGATTTAAAAT
AATAATTTGATTACTGCAGTGACGTAGAAAAAAATTATACGGCTAACGAT
TTTCGCTCAATTGTTATCAGGGGGGGGTGAAGCAGTTAGTACAAGACATC
ATGCCGGTTAGTACCGTGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTCTAAAATGTTGTTTTTTCCTATTGAAAGCTATGGAAAATTGAATCA
TTTTTAAGATATTAAATTTTATTTGATTTGATTTTATTGAATTTATGAAG
GCTTAAGGCTAAATTCAGTTAGTACTAACTGTACTAAGTGTACCAAGGTG
GTGGTGTTACTAACTTCTTCCGAGAAAGCAGTTAGTAGGCATGATGTCTT
GTACTAACTGCTTCACCCCCCCCTGTTGTTATAACCTTTTTATAACCATA
ATTTGTTTTTCCAAAACTTGTTCTGCTCAAACGTATGAGCCAGTTTTCTA
TGGTATGGTAAGACAAATTTTATCATTTACTTTTTTCAAATTTTTTTGAT
TTGTATGTGACGTCATTTGACGTTCGAACTGCCTTTTGATTGGTCTTTTT
TTTTCTCAAAATGGCAGAAAATATATTTTTGGGATGTTAGCTCCAACAAA
GTAACATAAAATGATTTGTCTCAGCTTATTTATTTTTTGGATAAATCTGC
TCTAAATTCCCAATCTCTTGCTACTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCTACTGCCTTGACAC
TTTTGTGTCCTCCCGAGACAAACGTTTCTTCTACCAAAATAGGAAAGCCC
TCAAATTTTCATAGGAAAATGAAAACTTTCATTTCGATTTAAGTTTGATG
TGGTTCGACGATTGTGTCGGATTGATTCTACTTTTCTTTACCTTTCAGAA
AATAACGAGGTTGTTTAATCAAAACACAGGCACCGTATGCTTCACTGCAC
TCATTCAGTTACATCAAAATGCCTCGAAAATGTCAAAATGAAAATTGCGT
AATCAGAGAACGTATGTCTCGCTCATTATAAAAAGGCCGATACAAACTCT
CAATAATTGTAACATCGAGTTAAGTCTCTTTTGTTAAGTCACCAGGGGGT
AAATAAAACAGACCTTGATACATTTATCGTTCGTTTCAACTTGACGATTC
GTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTAAAATATGTACAAAGAAATTCATACTTTTCCAACC
CGGCAAATCTTTAAAAAAGAAGCGAACAATAAAATATAATTACCCTTTCC
AAATAAACCTCTTCAGTGGCGAGCGTAGTTTGACATCGCTCTGTGTATTT
ACATTCGTTGTAATGTAATGTTGTTTGGGGAATTATGAAGTTCTTTGGAA
TTTCGATTGCATTTATTCAGGTTGATTTTTTATGACTTCTAATGGTACTT
TTTCTAACGAGTTTGATTACTCTGTTTTCACACGGGCGCACTTATGTCTT
TTTTTTTGCGTCCTTTTCCGTGATTACTTTTATTTATATTTTTAAAGACA
GGTAAGAAGGCATATTCTGCATATTGATGTAACTGTCATTATTGTTCATT
TGAAATAATAGAGATGACATTTTCTTTAAAGAAAGTAATAAAAATTAAAA
TCTTTTTTTTACAAATTAACAACCAAAGAGATTGTAAAAGCTCCAGCTTG
TCCCATCCGATGGGATAGATATAGGATGGCCCGCGAGAATGGCCCGTGGG
CGGGGTGAAGGCTTCTTCATAAAGACGAAAGACATGTATCTATTTTTCGG
ATCCAGCATGCGGGAATAGTGTCAGGACCTGCAGGCGACCTGGTAGGGTT
GGGCCCGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTGGGCCAAAAAA
ACAGCTAAAAAACGGGTTTTTTGGACTTTCTGAAATATTGGATCATTGTT
TTTTTCTGATATTTTGCTAGAAAGTAGGTAAAAGATTGCTCAAGCAGATT
TTTGTAAAAAACGAATTTTTCAGCTCAAAAAACGCATCTTTATCTATAAG
AATCACTATTAATAAGCGTACATCAATGTTCTTAGCCAAATTACTCAATT
TTTCGATGAGATAGATGTTTGTTTTTGCTCACAAAGTCTTGAATATGAAA
GAATATTTCAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTTTATAAG
AAACAAACAACTAATTTTGATAGATCGTCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
CTGAATGATTGTTTAATGGTCACGTCACGTAGATATCAATTATAAATGTG
TTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTATTTATT
GGTTTACAGATCCGCTAACGTTATTTTTGCCAAAACAAAAAAAAATAAAA
TAGAGATTTAAAAAACTTTTATTTACTTTTTCTCCTCCGACCTTCAAAAA
AGAAGAAATAAATGAAAAAAACAAACAAAAACACAGATGTGCCCTATTCT
GCCAATGTAAAGATACTTTAATAATCCTTCCCTTAATGTCAGGGAACTTC
CCCATGGAATTTCCCTATCCACAAAAAACAACTTCAAGAGTACATTTTTT
CTGCAAATGTGCTAAGAAGGAGAGTTGTCAAGAGAGTCTTATTCAAAAAA
CGATACTTAGGAAATTTCATAAAATTTTCTTTTATTATTTCCTCCAGTTT
CAGATTTTGAAAAATAAAACAAAAAGAATTCAAACATCAATTTTATTTTT
ATTTTTTTCCATTCTCCTGTTCAATACTTTTCCTCAAAATGTCTGTAAAC
CAGAAAATAAAAAAGTAATTGCCTTAGCAAAGTAAAAAAAAAAAATTTTT
CAGACACTTTGAGATTTGACCCAGCAACGATTTATATTATGAAAGGTTGA
GGTTGTTGTTTCAGCTTTCTGTATTATAGTGGTTGCACAGTGTCCTCCCC
TCCCCGTTTCCATTGGGGGAACTTTTTGAAAAACTAGAAAAGAGGGGGGA
AATACTTTTTAAAATTTCAGGGGTCAAAGAGGGGGGGGTTAAATATGTCC
AAAAAAAGCAGATCGTGAAGAAAATCTAATGTTCAATCTTGTCTGATGAA
ATATTTGTTCAATAAAAAAGAGGGTTTGTAATTTACACTTGAAAGTTTTT
TCTTTACAGGGACTCAAAGTGACTCTAAGGCTTTTTTAAGAGGGGGAACT
AACCCTACAAGACACACTGGGTTGTTTTATTGTTCCAATTCTATTTTCAT
TCCTTAAATTACAAACTATTTTAGCTTTTCCTTTTGCCTTTATTACAGTC
CAAATTTATTAAATTTGAGCAAAAAGAATACTGTCACTGTCAACAGAATA
AACAAAGACATTTTTCTCATCCTACAGACGATCAAAGATCATGTTTGAAG
TAGAGATGGATGGTCATGAAAATGTGGAAATCGAAAGTGAAAGTGACTGG
GATAGCGAGGGTGAAAATCCTTCTGAAAGTGAATTGGACAGTGACGTCGA
AATCAAAAACTCACTTGCCACCTCTGCAGTAAGTTAAAATATAATAAAAA
AGGTGTTAAAGTGATTTGACAGCATTGATAAAAGATAACAAAAGACTTAT
CTTTTGCTTTGTTACGACATACAGATTTTTTTCCATTTTAGATGGATGGA
TTTGGGAACTTGTTATCTTCAAATACAAAGAATAATGAAACCATAGATAT
TATAAAAGAAATCCATTCAGCTCTTCTACTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027181XLOC_027181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043485-exon-sc0004281-1575043694:7312..7494TCONS_00043485-exon-sc0004281-1575043694:7312..7494Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1575043694:1417..1567TCONS_00043485-exon-sc0004281-1575043694:1417..1567Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1575043694:1211..1303TCONS_00043485-exon-sc0004281-1575043694:1211..1303Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1510915933:7312..7494TCONS_00043485-exon-sc0004281-1510915933:7312..7494Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1510915933:1417..1567TCONS_00043485-exon-sc0004281-1510915933:1417..1567Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1510915933:1211..1303TCONS_00043485-exon-sc0004281-1510915933:1211..1303Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1491911889:7312..7494TCONS_00043485-exon-sc0004281-1491911889:7312..7494Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1491911889:1417..1567TCONS_00043485-exon-sc0004281-1491911889:1417..1567Clytia hemisphaericaexon
TCONS_00043485-exon-sc0004281-1491911889:1211..1303TCONS_00043485-exon-sc0004281-1491911889:1211..1303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004281supercontigsc0004281:1211..7494 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.94829	3.98677	1.33285	2.55627	5.72707	7.5542	9.59314	6.95465	4.40042	3.75318	6.4797	4.00215	5.40016	3.14895	2.62982	3.23202	2.64966	3.03023	1.47435	0.997586	1.31733	2.73935	2.31532	3.05908	7.79574	7.18284	1.09082	0.428452	2.45583	2.93542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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