TCONS_00043484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043484
Unique NameTCONS_00043484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043484 ID=TCONS_00043484|Name=TCONS_00043484|organism=Clytia hemisphaerica|type=transcript|length=348bp
CAAAAAAGATTAAGAGGTTTACAggttgaaaatacaaaattctggtattt
ttcaaattattttcacaGCAAACTATAATAACTACGTACCTGTCCACCAG
AAAACGGGGCAGTGATGAGAGCAACGTCTTCCCCTGTTCCAAAACTGACA
ATACTCCTCTGAGAAAATTGATACTGTTTTGCAAGGTGACTGCAAAATGA
TTTTAGAAGATGGCTTCGTTTTGACAGCATTTTAACAGTAAATTATAAAC
GCTCGTCTAAAAATATGAACAGTTCAGGTTGTCATTGATTAAAAATActg
gtcaatttttttaaaaattttgtctgGCATCTTGAATGTTGTGATGCG
Run BLAST on NCBI

transcript from alignment at sc0004279:4149..4496

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043484 ID=TCONS_00043484|Name=TCONS_00043484|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at sc0004279:4149..4496 (Clytia hemisphaerica)
CGCATCACAACATTCAAGATGCcagacaaaatttttaaaaaaattgacca
gTATTTTTAATCAATGACAACCTGAACTGTTCATATTTTTAGACGAGCGT
TTATAATTTACTGTTAAAATGCTGTCAAAACGAAGCCATCTTCTAAAATC
ATTTTGCAGTCACCTTGCAAAACAGTATCAATTTTCTCAGAGGAGTATTG
TCAGTTTTGGAACAGGGGAAGACGTTGCTCTCATCACTGCCCCGTTTTCT
GGTGGACAGGTACGTAGTTATTATAGTTTGCtgtgaaaataatttgaaaa
ataccagaattttgtattttcaaccTGTAAACCTCTTAATCTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027180XLOC_027180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043484-exon-sc0004279-1491911889:4149..4496TCONS_00043484-exon-sc0004279-1491911889:4149..4496Clytia hemisphaericaexon
TCONS_00043484-exon-sc0004279-1510915933:4149..4496TCONS_00043484-exon-sc0004279-1510915933:4149..4496Clytia hemisphaericaexon
TCONS_00043484-exon-sc0004279-1575043694:4149..4496TCONS_00043484-exon-sc0004279-1575043694:4149..4496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004279supercontigsc0004279:4149..4496 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.51239	11.6131	7.99155	5.16033	2.40733	0.9948	0.3752	2.21872	5.91049	2.78052	2.26887	3.06232	2.6492	1.48784	4.72527	6.63783	6.96595	7.46188	1.45583	7.4976	10.0624	10.7133	8.77098	7.64429	0	0	11.2786	11.4294	3.58523	3.9862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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