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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043472 ID=TCONS_00043472|Name=TCONS_00043472|organism=Clytia hemisphaerica|type=transcript|length=2219bp
GTGATGATAGGTGTCTGAGAGCTGGATGCCATGTGCAGACGAAGATGGAT
TGTTGatcttgtttatctttttcttttgaacgaAAGAGAGATTCCCGACT
GCTCTTCAGGACGTCTTTGTACGCGTTTTCAACAACATCGTGTCTGTACC
CTCTTTTCAGAAAGTACTAAAGGAGTTGTTTGCCATGGTTGATGTAGTCA
GCTACATTCGTACAAATTCGACGGATTCTGATGAATTGTCCCTTCGGGAT
GTTTCTGATGACATGGTTTGGATGACAAGATTTGGCATTGAGGTATAAGT
GTGCATCTGTTGCTTTGGAATACACGCTTGTCTGGATGGTGCTGTCACGA
AAACGAACCTCGACGTCCAGGAAATTTACGGAGTCAGTTGATTGATGCGT
CTCGTATTGAATGGTTGATTTCATTTTGCggcttttcgaaaaattattgC
AAAAATCGATAAACTGATTCAGTGACTCGTTGCCATGGGTCCAGATGAAG
AAGATATCGTCGATATAGCAGTACCAAACGAGGGGTCTGAGCTTGGTGAG
TTCGTAATATTCGTCAAGCATTTTCGTCTCTAATGATGCCATGAAGAGGT
TTGCGTAGTTTGGAGCCATTGGAGTACCCATCGCGGTTCCTTTGATTTGG
TGGTAGATGTTGCACCCAAATCGGAATACGTTTGACCGTAGTACCAGAAG
TATCAGCTTTTTTAGATAAGATGAGCTGATCGATTTCTTGTTGCGTTGTT
CCAGATGATCAAAGCAGGCATTTGCTCCTTCTTCGTGATCGATGTTGGTG
TACAGTGAAGCAACATCCATCGTAACGAGTATGGTGTTCGAAGGAAGCGA
TGGAAGATCAGCTAATCTTACAAGGAAGTCTTTTGTGTCGCGAATGTAAG
AATTCGTTTTTTGCGCTTGGTATTTCAGGAAGCCGTCAAGGAATTCTGAG
AGTCGGTTACTGCAGGATGAGAAGCCGGAGACAATCGGTCTTAGAGGCGg
gaatttcgaaaagtttttgtGTAATTTTGGCAAGCCATAAAATACTGGTG
TTCGTGGATTTGATAAATGTTCAGTTAATACGATGTGTTCTTTATCGGTG
ATTTTGGATTTCGATTTAAGATTGTCAATCTCCTTTCGTATGGTGTCTGC
GTAATTCTGATTTGAATCAGTATCAAGCTGTTCATAGAAATGTTTATTCT
CGAGTTGATCATTGCAGGCTACGATGTAGTCAGTCCTGTTCATCACGACA
ATTTTCCCACCTTTATCTGCTTTTTGAACGATGATGTTGCGGTCCCTGGA
GAGTTTTTCAAGAGAATGTTGCTCTTCCCTTGTGATGTTGCTTTTCGGCC
GTTTGGAATCATCAGCAAGCAGCTTCACAATATCCGACTTGATACAGGAA
AGATAGTTCTCGAGATTCGGGCATTCACTATCATCGACTGGATCATAGTA
TGGATTGCGGTACGTTGATTTCATTTGGCAGCGTTCGGTCTCTTCACACG
CATTCTCGGGGTTGGTAGACTTTTCGTCATGTTCATCTACCAAGTTTCGA
AATTGATATCTCAATCGTTGTTTTCGGCAATACGCGTGTACGTCATCCAG
CAGCTGTTCAGGATCTGGTGATGGTGACGATGGACAGAAAATGAGCCCCC
TTTCCAGCAATGATAGTTCGGCAGTAGAAAGTTTGTGGCTTGACAGATTG
TGGACGATTTCAGATGTTTGTGTACGTGTTGTATTGTCGTTCGATTTTCT
CGGCACTTGTCGGACAGCTTGATCTGTTGACGGAAGCACAAAAcgatttg
aaagttttaaatctGCTTGAATGACTGTTTTTTCTCTGATGCGTTGTGAA
CTTCTCGGcattttccattatttttattatttttattattattggcATTG
ATCCATGACAAGTTGTACGTTGGTCACACAGGAGAAGCCTTGTCAACGCG
TTTTTCAAAGCACCGCTACGACATTGGAAAGAGACCGAAAAATTCAGAGT
TGGCAGAACATTTCCATCGCGACCACTCCTTTGCTGACCTTGAGGTGATG
ATCCTAGAAAGTGAATTTTCATCCTCCGCAGAAAGAGAACGAGCCGAAGA
TAAATGGATGTGCAGNNAAGTGTACCAGATGTTCCGTGACGTCAAAAACT
GAAGAAGTCATTGTAATGCCGTTCTAGCGTCGTTAAATATAATTGTTAAA
CGtctttgttattcaaaaa Run BLAST on NCBI protein sequence of TCONS_00043472-protein >TCONS_00043472-protein ID=TCONS_00043472-protein|Name=TCONS_00043472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
MPRSSQRIREKTVIQADLKLSNRFVLPSTDQAVRQVPRKSNDNTTRTQTS
EIVHNLSSHKLSTAELSLLERGLIFCPSSPSPDPEQLLDDVHAYCRKQRL
RYQFRNLVDEHDEKSTNPENACEETERCQMKSTYRNPYYDPVDDSECPNL
ENYLSCIKSDIVKLLADDSKRPKSNITREEQHSLEKLSRDRNIIVQKADK
GGKIVVMNRTDYIVACNDQLENKHFYEQLDTDSNQNYADTIRKEIDNLKS
KSKITDKEHIVLTEHLSNPRTPVFYGLPKLHKNFSKFPPLRPIVSGFSSC
SNRLSEFLDGFLKYQAQKTNSYIRDTKDFLVRLADLPSLPSNTILVTMDV
ASLYTNIDHEEGANACFDHLEQRNKKSISSSYLKKLILLVLRSNVFRFGC
NIYHQIKGTAMGTPMAPNYANLFMASLETKMLDEYYELTKLRPLVWYCYI
DDIFFIWTHGNESLNQFIDFCNNFSKSRKMKSTIQYETHQSTDSVNFLDV
EVRFRDSTIQTSVYSKATDAHLYLNAKSCHPNHVIRNIPKGQFIRIRRIC
TNVADYINHGKQLL Run BLAST on NCBI transcript from alignment at sc0004268:824..3042 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043472 ID=TCONS_00043472|Name=TCONS_00043472|organism=Clytia hemisphaerica|type=transcript|length=2219bp|location=Sequence derived from alignment at sc0004268:824..3042 (Clytia hemisphaerica)
tttttgaataacaaagaCGTTTAACAATTATATTTAACGACGCTAGAACG
GCATTACAATGACTTCTTCAGTTTTTGACGTCACGGAACATCTGGTACAC
TTNNCTGCACATCCATTTATCTTCGGCTCGTTCTCTTTCTGCGGAGGATG
AAAATTCACTTTCTAGGATCATCACCTCAAGGTCAGCAAAGGAGTGGTCG
CGATGGAAATGTTCTGCCAACTCTGAATTTTTCGGTCTCTTTCCAATGTC
GTAGCGGTGCTTTGAAAAACGCGTTGACAAGGCTTCTCCTGTGTGACCAA
CGTACAACTTGTCATGGATCAATgccaataataataaaaataataaaaat
aatggaaaatgCCGAGAAGTTCACAACGCATCAGAGAAAAAACAGTCATT
CAAGCagatttaaaactttcaaatcgTTTTGTGCTTCCGTCAACAGATCA
AGCTGTCCGACAAGTGCCGAGAAAATCGAACGACAATACAACACGTACAC
AAACATCTGAAATCGTCCACAATCTGTCAAGCCACAAACTTTCTACTGCC
GAACTATCATTGCTGGAAAGGGGGCTCATTTTCTGTCCATCGTCACCATC
ACCAGATCCTGAACAGCTGCTGGATGACGTACACGCGTATTGCCGAAAAC
AACGATTGAGATATCAATTTCGAAACTTGGTAGATGAACATGACGAAAAG
TCTACCAACCCCGAGAATGCGTGTGAAGAGACCGAACGCTGCCAAATGAA
ATCAACGTACCGCAATCCATACTATGATCCAGTCGATGATAGTGAATGCC
CGAATCTCGAGAACTATCTTTCCTGTATCAAGTCGGATATTGTGAAGCTG
CTTGCTGATGATTCCAAACGGCCGAAAAGCAACATCACAAGGGAAGAGCA
ACATTCTCTTGAAAAACTCTCCAGGGACCGCAACATCATCGTTCAAAAAG
CAGATAAAGGTGGGAAAATTGTCGTGATGAACAGGACTGACTACATCGTA
GCCTGCAATGATCAACTCGAGAATAAACATTTCTATGAACAGCTTGATAC
TGATTCAAATCAGAATTACGCAGACACCATACGAAAGGAGATTGACAATC
TTAAATCGAAATCCAAAATCACCGATAAAGAACACATCGTATTAACTGAA
CATTTATCAAATCCACGAACACCAGTATTTTATGGCTTGCCAAAATTACa
caaaaacttttcgaaattccCGCCTCTAAGACCGATTGTCTCCGGCTTCT
CATCCTGCAGTAACCGACTCTCAGAATTCCTTGACGGCTTCCTGAAATAC
CAAGCGCAAAAAACGAATTCTTACATTCGCGACACAAAAGACTTCCTTGT
AAGATTAGCTGATCTTCCATCGCTTCCTTCGAACACCATACTCGTTACGA
TGGATGTTGCTTCACTGTACACCAACATCGATCACGAAGAAGGAGCAAAT
GCCTGCTTTGATCATCTGGAACAACGCAACAAGAAATCGATCAGCTCATC
TTATCTAAAAAAGCTGATACTTCTGGTACTACGGTCAAACGTATTCCGAT
TTGGGTGCAACATCTACCACCAAATCAAAGGAACCGCGATGGGTACTCCA
ATGGCTCCAAACTACGCAAACCTCTTCATGGCATCATTAGAGACGAAAAT
GCTTGACGAATATTACGAACTCACCAAGCTCAGACCCCTCGTTTGGTACT
GCTATATCGACGATATCTTCTTCATCTGGACCCATGGCAACGAGTCACTG
AATCAGTTTATCGATTTTTGcaataatttttcgaaaagccGCAAAATGAA
ATCAACCATTCAATACGAGACGCATCAATCAACTGACTCCGTAAATTTCC
TGGACGTCGAGGTTCGTTTTCGTGACAGCACCATCCAGACAAGCGTGTAT
TCCAAAGCAACAGATGCACACTTATACCTCAATGCCAAATCTTGTCATCC
AAACCATGTCATCAGAAACATCCCGAAGGGACAATTCATCAGAATCCGTC
GAATTTGTACGAATGTAGCTGACTACATCAACCATGGCAAACAACTCCTT
TAGTACTTTCTGAAAAGAGGGTACAGACACGATGTTGTTGAAAACGCGTA
CAAAGACGTCCTGAAGAGCAGTCGGGAATCTCTCTTtcgttcaaaagaaa
aagataaacaagatCAACAATCCATCTTCGTCTGCACATGGCATCCAGCT
CTCAGACACCTATCATCAC Coding sequence (CDS) from alignment at sc0004268:824..3042 >TCONS_00043472 ID=TCONS_00043472|Name=TCONS_00043472|organism=Clytia hemisphaerica|type=CDS|length=1695bp|location=Sequence derived from alignment at sc0004268:824..3042 (Clytia hemisphaerica)
atgCCGAGAAGTTCACAACGCATCAGAGAAAAAACAGTCATTCAAGCaga
tttaaaactttcaaatcgTTTTGTGCTTCCGTCAACAGATCAAGCTGTCC
GACAAGTGCCGAGAAAATCGAACGACAATACAACACGTACACAAACATCT
GAAATCGTCCACAATCTGTCAAGCCACAAACTTTCTACTGCCGAACTATC
ATTGCTGGAAAGGGGGCTCATTTTCTGTCCATCGTCACCATCACCAGATC
CTGAACAGCTGCTGGATGACGTACACGCGTATTGCCGAAAACAACGATTG
AGATATCAATTTCGAAACTTGGTAGATGAACATGACGAAAAGTCTACCAA
CCCCGAGAATGCGTGTGAAGAGACCGAACGCTGCCAAATGAAATCAACGT
ACCGCAATCCATACTATGATCCAGTCGATGATAGTGAATGCCCGAATCTC
GAGAACTATCTTTCCTGTATCAAGTCGGATATTGTGAAGCTGCTTGCTGA
TGATTCCAAACGGCCGAAAAGCAACATCACAAGGGAAGAGCAACATTCTC
TTGAAAAACTCTCCAGGGACCGCAACATCATCGTTCAAAAAGCAGATAAA
GGTGGGAAAATTGTCGTGATGAACAGGACTGACTACATCGTAGCCTGCAA
TGATCAACTCGAGAATAAACATTTCTATGAACAGCTTGATACTGATTCAA
ATCAGAATTACGCAGACACCATACGAAAGGAGATTGACAATCTTAAATCG
AAATCCAAAATCACCGATAAAGAACACATCGTATTAACTGAACATTTATC
AAATCCACGAACACCAGTATTTTATGGCTTGCCAAAATTACacaaaaact
tttcgaaattccCGCCTCTAAGACCGATTGTCTCCGGCTTCTCATCCTGC
AGTAACCGACTCTCAGAATTCCTTGACGGCTTCCTGAAATACCAAGCGCA
AAAAACGAATTCTTACATTCGCGACACAAAAGACTTCCTTGTAAGATTAG
CTGATCTTCCATCGCTTCCTTCGAACACCATACTCGTTACGATGGATGTT
GCTTCACTGTACACCAACATCGATCACGAAGAAGGAGCAAATGCCTGCTT
TGATCATCTGGAACAACGCAACAAGAAATCGATCAGCTCATCTTATCTAA
AAAAGCTGATACTTCTGGTACTACGGTCAAACGTATTCCGATTTGGGTGC
AACATCTACCACCAAATCAAAGGAACCGCGATGGGTACTCCAATGGCTCC
AAACTACGCAAACCTCTTCATGGCATCATTAGAGACGAAAATGCTTGACG
AATATTACGAACTCACCAAGCTCAGACCCCTCGTTTGGTACTGCTATATC
GACGATATCTTCTTCATCTGGACCCATGGCAACGAGTCACTGAATCAGTT
TATCGATTTTTGcaataatttttcgaaaagccGCAAAATGAAATCAACCA
TTCAATACGAGACGCATCAATCAACTGACTCCGTAAATTTCCTGGACGTC
GAGGTTCGTTTTCGTGACAGCACCATCCAGACAAGCGTGTATTCCAAAGC
AACAGATGCACACTTATACCTCAATGCCAAATCTTGTCATCCAAACCATG
TCATCAGAAACATCCCGAAGGGACAATTCATCAGAATCCGTCGAATTTGT
ACGAATGTAGCTGACTACATCAACCATGGCAAACAACTCCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043472-exon-sc0004268-1491911889:824..3042 | TCONS_00043472-exon-sc0004268-1491911889:824..3042 | Clytia hemisphaerica | exon |
| TCONS_00043472-exon-sc0004268-1510915933:824..3042 | TCONS_00043472-exon-sc0004268-1510915933:824..3042 | Clytia hemisphaerica | exon |
| TCONS_00043472-exon-sc0004268-1575043694:824..3042 | TCONS_00043472-exon-sc0004268-1575043694:824..3042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004268 | supercontig | sc0004268:824..3042 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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