TCONS_00043470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043470
Unique NameTCONS_00043470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043470 ID=TCONS_00043470|Name=TCONS_00043470|organism=Clytia hemisphaerica|type=transcript|length=433bp
GACGGAGCCGTCCATTGCATAGAGCTGAAGTAGATTGGTGGATTACAAAC
ATTTCATCATCAGTTCACAAAGTGAATATCAAAAACAATGTATTTGTATG
CTAACCACTGACAAGACAGTATTCGTTGAAGGCCCTATCATTATTTGGTT
GGGCAAAAAGAGAGAAGAATATTTCATNAAAACAGTATTTGTTGAAGGCC
CTATCAATATTTGGCTGGGTAAAAAGAGAGAAGAATATTTCATACTGAAA
ACAGGGCGTCAAGATTTGGTGACTTGTGATGAATTGACAGTACAACCGGA
TGAAGAAAGAGAAGGAGTGGTATTAGCCGTTTGTTTTGCAACGCACGTAG
GGATTCTAACCTTTACTTTACTTTGTACTTTAATATTACTGGAACTCCTG
CTATTTGTGATTTTTGTAACGTATAGGACAATT
Run BLAST on NCBI

protein sequence of TCONS_00043470-protein

>TCONS_00043470-protein ID=TCONS_00043470-protein|Name=TCONS_00043470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MLTTDKTVFVEGPIIIWLGKKREEYFXKTVFVEGPINIWLGKKREEYFIL
KTGRQDLVTCDELTVQPDEEREGVVLAVCFATHVGILTFTLLCTLILLEL
LLFVIFVTYRTI
Run BLAST on NCBI

transcript from alignment at sc0004264:3539..4265-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043470 ID=TCONS_00043470|Name=TCONS_00043470|organism=Clytia hemisphaerica|type=transcript|length=727bp|location=Sequence derived from alignment at sc0004264:3539..4265- (Clytia hemisphaerica)
GACGGAGCCGTCCATTGCATAGAGCTGAAGTAGATTGGTGGATTACAAAC
ATTTCATCATCAGTTCACAAAGTGAATATCAAAAACAATGTATTTGTATG
CTAACCACTGACAAGACAGTATTCGTTGAAGGCCCTATCATTATTTGGTT
GGGCAAAAAGAGAGAAGAATATTTCATNAAAACAGTATTTGTTGAAGGCC
CTATCAATATTTGGCTGGGTAAAAAGAGAGAAGAATATTTCATACTGAAA
ACAGGGCGTCAAGATTTGGTGACTTGTGATGAATTGACAGTACAACCGGA
TGAAGAAAGAGAAGGTTGCCTTTTTGTTTGTAGATTCTTAACATTTGTGA
ATCAGGAAAAGTGTTGGCTATAAAAGGGTTGTGCCCTTGCTAACCGACAG
CCATGTATTTTCGAAATATGAATCAATTCGCAAAAAAAAAGAGAATATTT
TTCAACCATGGGTTTAACTGAATGTTCACTTTTTCCCCTAAAGAGTCAAT
CTATGATGATCAATATGCCTTTTCAAACTCTCGTAAATTTCTGTGTATTT
AGGGAAGGAATGAGTTCTTTTTTTGTGTATCTTCATTTTATATTATTTGT
TATTTCAGGAGTGGTATTAGCCGTTTGTTTTGCAACGCACGTAGGGATTC
TAACCTTTACTTTACTTTGTACTTTAATATTACTGGAACTCCTGCTATTT
GTGATTTTTGTAACGTATAGGACAATT

Coding sequence (CDS) from alignment at sc0004264:3539..4265-

>TCONS_00043470 ID=TCONS_00043470|Name=TCONS_00043470|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0004264:3539..4265- (Clytia hemisphaerica)
GAGTGGTATTAGCCGTTTGTTTTGCAACGCACGTAGGGATTCTAACCTTT
ACTTTACTTTGTACTTTAATATTACTGGAACTCCTGCTATTTGTGATTTT
TGTAACGTATAGGACAATTATGCTAACCACTGACAAGACAGTATTCGTTG
AAGGCCCTATCATTATTTGGTTGGGCAAAAAGAGAGAAGAATATTTCATN
AAAACAGTATTTGTTGAAGGCCCTATCAATATTTGGCTGGGTAAAAAGAG
AGAAGAATATTTCATACTGAAAACAGGGCGTCAAGATTTGGTGACTTGTG
ATGAATTGACAGTACAACCGGATGAAGAAAGAGAAGGAGTGGTATTAGCC
GTTTGTTTTGCAACGCACGTAGGGATTCTAACCTTTACTTTACTTTGTAC
TTTAATATTACTGGAACTCCTGCTATTTGTGATTTTTGTAACGTATAGGA
CAATTATGCTAACCACTGACAAGACAGTATTCGTTGAAGGCCCTATCATT
ATTTGGTTGGGCAAAAAGAGAGAAGAATATTTCATNAAAACAGTATTTGT
TGAAGGCCCTATCAATATTTGGCTGGGTAAAAAGAGAGAAGAATATTTCA
TACTGAAAACAGGGCGTCAAGATTTGGTGACTTGTGATGAATTGACAGTA
CAACCGGATGAAGAAAGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027166XLOC_027166Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043470-proteinTCONS_00043470-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043470-exon-sc0004264-1575043694:3952..4265TCONS_00043470-exon-sc0004264-1575043694:3952..4265Clytia hemisphaericaexon
TCONS_00043470-exon-sc0004264-1575043694:3539..3657TCONS_00043470-exon-sc0004264-1575043694:3539..3657Clytia hemisphaericaexon
TCONS_00043470-exon-sc0004264-1510915933:3952..4265TCONS_00043470-exon-sc0004264-1510915933:3952..4265Clytia hemisphaericaexon
TCONS_00043470-exon-sc0004264-1510915933:3539..3657TCONS_00043470-exon-sc0004264-1510915933:3539..3657Clytia hemisphaericaexon
TCONS_00043470-exon-sc0004264-1491911889:3952..4265TCONS_00043470-exon-sc0004264-1491911889:3952..4265Clytia hemisphaericaexon
TCONS_00043470-exon-sc0004264-1491911889:3539..3657TCONS_00043470-exon-sc0004264-1491911889:3539..3657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004264supercontigsc0004264:3539..4265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.79357	4.80909	3.85403	1.85781	2.77664	3.71316	8.67336	10.1271	2.55371	3.63703	2.79471	2.01557	1.93868	1.70173	1.7987	1.54422	1.56586	4.65231	2.06402	0.965554	2.98797	2.70977	6.32533	6.77766	5.55123	3.79411	0.868697	0.248867	4.7441	4.26568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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