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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043467 ID=TCONS_00043467|Name=TCONS_00043467|organism=Clytia hemisphaerica|type=transcript|length=2194bp
caaggattccaaagaatatcacaacatatacctgaaaatcaatatttgag
aagcttNTAACATATCTATCAATCAACACTTTCCCACAGTTAACTGGAGT
ATACCAAAATGTTTAAATTATAAATGGCTTTTGTGTTAGAAAACTGTCAG
CGTATTAAGTAATGTTGTCCTTATTGATAGGTGTGAAGATTTCAGTTTGA
TCAAGCTTGTTGTGAAGCTGCTTGGGCATACGCAAAATTTACTTGGCAAG
TTACCGTTTCCTTTTTCATGGACCTGATAATTCAAACccaatttttttgt
atttgtagCTTTGGGAGTTTCTGCCCCTGGGGtaactttatttttcatct
aCTCTATACATCTTTTTATCTTGTTTATCCTTACtcagttttaatttttc
acCATTGATATGATCATCAAAAGTGTTTGTTTCATTATGAATACAATTTC
TAAAAGTTAAGTTGATCATATTGATGGTATTCTCTGTGCCCCACTTTATT
CACTTCCTCACCAAATGTGAAAATTTTGTCAGTCAAACCTACAAGATTTT
TTATTGGACCCTTTTCTTcattactttaagggcagaaactccATTTTTAA
TGACATTGAACTATAGACCCCTTGCAGACAATGAAATTTGATAGAGATGA
TAGATATGATTTGATAAATAATAAGACTCTGCCCTTGAgtgagtttgaaa
tttcaacaACACTTGCCTGTCTAAAACTATCTGACATTTTAAGGCCCTGA
TTGGTCTGGGCTTTCATCATCGATAAATAGTTATGAGAAAGGAGCTAGTC
AGACTATTTATGTGATTTTTTAGAAAGTTATCGATGGTGAATTTCTTGAC
CAATCCAAGCTAatcgatttttttgaaaattcagattATGAGGTTTGAGA
CATTTATGTGCTTTGATAATTTCCAAACTGATCGATTAGTTTGCCCCTCC
CAAGAATCAAATGACATTTTAAAACTCACATTATTTCAAGGGCAGAAATT
TTCATACTATTCTAAAACTGGAGACATACCTTACATATTACACCCAACCT
TACTTTTTTAGTCTTTGCACTGTCTTTTGTTggtcttgtttttctttttg
atttagTATCTGGCAAAGGAATATTGGCAACGAAAATTTTCACCGAGCTA
ATCAGTGACATGCAGAATCTCTTTGAACAAAGACGATAAATAATGCTGTT
GCAATATAAACAGATTTCCCACTGTTTATCACAAAGCTGTTCATGAAGCA
ATTCATTGTCTTGTTTTGTAAACTCGAGCGACTTGGTCGATCATTCAAAA
CTCGTCACCTAAAACGGACTTATTATGCATTGTTCCAATTCGGcaagttg
attttatttcatcCATCTACAGATATTTCCCTTTCATCTCTTTCACTTAA
AGGTGTAAATAAGTTGGTTAAATGAATCATTCCCTCAGGGTCATGCGAAG
GAAGAATTTTTTACAGAagctttcttttcattttttataccTTTGCTAAG
CCAGTGTTTCATTACTCGTACAATGAGAAGAATTGTCAATCAAAGTCTCT
ACCAATTAAAGACTTTGTTGACGATTTAATCTCATTTTACTGACTTTGAT
TGTTGATCGTTGGTTTGAGGGTTaagatgttgttgttgttgttgctgctg
ttgttgttgtggttggtTATAATAAAACACAGGCTTAATAGCAGAAACTA
ATCATTGGTTTTCGAATGAGTCATCTCGCCAACTTTTTACACCTTTTAAT
TGAAACTTAGATAAGAAATGGGAAGCATAAATAGCATAAATAGCATTGTT
TTTTGATCAAGCTATAAAATGTTGAGCATACTACTGCAGCTATCTATTTA
TTTTTAGGTGATGCAAGATCAAATTATTCGTTGTCAAACTTTGATTGGAC
GttgttcatcaaaatcattgattatttcattAAATTATTCGATGTTACAC
TTACCGGTGGCTATTATACAAATTATGTCGATCGCTGCATATGAACAAAA
GGAGTCAACAGAATCAGGTAATGCTATACAAAACACAGGAtgtttcattc
aatttttttcctaACATATGGACACTACTTAACCATATCCACATCTAATT
TCAGTTTAGAAAAGTTAACGTTAGTATTTTTAAATCCGCTTGTAAATCGT
ATAttgcaaatttaattttcaaaaataaaaattcataacAGAAA Run BLAST on NCBI transcript from alignment at sc0004258:5356..7750- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043467 ID=TCONS_00043467|Name=TCONS_00043467|organism=Clytia hemisphaerica|type=transcript|length=2395bp|location=Sequence derived from alignment at sc0004258:5356..7750- (Clytia hemisphaerica)
CAAGGATTCCAAAGAATATCACAACATATACCTGAAAATCAATATTTGAG
AAGCTTNTAACATATCTATCAATCAACACTTTCCCACAGTTAACTGGAGT
ATACCAAAATGTTTAAATTATAAATGGCTTTTGTGTTAGAAAACTGTCAG
CGTATTAAGTAATGTTGTCCTTATTGATAGGTGTGAAGATTTCAGTTTGA
TCAAGCTTGTTGTGAAGCTGCTTGGGCATACGCAAAATTTACTTGGCAAG
TTACCGTTTCCTTTTTCATGGACCTGATAATTCAAACCCAATTTTTTTGT
ATTTGTAGCTTTGGGAGTTTCTGCCCCTGGGGTAACTTTATTTTTCATCT
ACTCTATACATCTTTTTATCTTGTTTATCCTTACTCAGTTTTAATTTTTC
ACCATTGATATGATCATCAAAAGTGTTTGTTTCATTATGAATACAATTTC
TAAAAGTTAAGTTGATCATATTGATGGTATTCTCTGTGCCCCACTTTATT
CACTTCCTCACCAAATGTGAAAATTTTGTCAGTCAAACCTACAAGATTTT
TTATTGGACCCTTTTCTTCATTACTTTAAGGGCAGAAACTCCATTTTTAA
TGACATTGAACTATAGACCCCTTGCAGACAATGAAATTTGATAGAGATGA
TAGATATGATTTGATAAATAATAAGACTCTGCCCTTGAGTGAGTTTGAAA
TTTCAACAACACTTGCCTGTCTAAAACTATCTGACATTTTAAGGCCCTGA
TTGGTCTGGGCTTTCATCATCGATAAATAGTTATGAGAAAGGAGCTAGTC
AGACTATTTATGTGATTTTTTAGAAAGTTATCGATGGTGAATTTCTTGAC
CAATCCAAGCTAATCGATTTTTTTGAAAATTCAGATTATGAGGTTTGAGA
CATTTATGTGCTTTGATAATTTCCAAACTGATCGATTAGTTTGCCCCTCC
CAAGAATCAAATGACATTTTAAAACTCACATTATTTCAAGGGCAGAAATT
TTCATACTATTCTAAAACTGGAGACATACCTTACATATTACACCCAACCT
TACTTTTTTAGTCTTTGCACTGTCTTTTGTTGGTCTTGTTTTTCTTTTTG
ATTTAGTATCTGGCAAAGGAATATTGGCAACGAAAATTTTCACCGAGCTA
ATCAGTGACATGCAGAATCTCTTTGAACAAAGACGATAAATAATGCTGTT
GCAATATAAACAGGTACATTCAACAAATTACCCCAATCCCATTCCAAAAT
AAATTGACCATTTTCAGACCCTTTACAGTTAAGATTGTTCTGTGGGTTTG
TTAAATAATTGCGTTGTTTGGGAGATAAATATATTTTCTTACTACAGAAT
ATTTTCCTGCAATGCATGACTGATTGCAGTGGTTTCATTCTTGCCTTCAT
TTTTTTAATTACAGATTTCCCACTGTTTATCACAAAGCTGTTCATGAAGC
AATTCATTGTCTTGTTTTGTAAACTCGAGCGACTTGGTCGATCATTCAAA
ACTCGTCACCTAAAACGGACTTATTATGCATTGTTCCAATTCGGCAAGTT
GATTTTATTTCATCCATCTACAGATATTTCCCTTTCATCTCTTTCACTTA
AAGGTGTAAATAAGTTGGTTAAATGAATCATTCCCTCAGGGTCATGCGAA
GGAAGAATTTTTTACAGAAGCTTTCTTTTCATTTTTTATACCTTTGCTAA
GCCAGTGTTTCATTACTCGTACAATGAGAAGAATTGTCAATCAAAGTCTC
TACCAATTAAAGACTTTGTTGACGATTTAATCTCATTTTACTGACTTTGA
TTGTTGATCGTTGGTTTGAGGGTTAAGATGTTGTTGTTGTTGTTGCTGCT
GTTGTTGTTGTGGTTGGTTATAATAAAACACAGGCTTAATAGCAGAAACT
AATCATTGGTTTTCGAATGAGTCATCTCGCCAACTTTTTACACCTTTTAA
TTGAAACTTAGATAAGAAATGGGAAGCATAAATAGCATAAATAGCATTGT
TTTTTGATCAAGCTATAAAATGTTGAGCATACTACTGCAGCTATCTATTT
ATTTTTAGGTGATGCAAGATCAAATTATTCGTTGTCAAACTTTGATTGGA
CGTTGTTCATCAAAATCATTGATTATTTCATTAAATTATTCGATGTTACA
CTTACCGGTGGCTATTATACAAATTATGTCGATCGCTGCATATGAACAAA
AGGAGTCAACAGAATCAGGTAATGCTATACAAAACACAGGATGTTTCATT
CAATTTTTTTCCTAACATATGGACACTACTTAACCATATCCACATCTAAT
TTCAGTTTAGAAAAGTTAACGTTAGTATTTTTAAATCCGCTTGTAAATCG
TATATTGCAAATTTAATTTTCAAAAATAAAAATTCATAACAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043467-exon-sc0004258-1575043694:6538..7750 | TCONS_00043467-exon-sc0004258-1575043694:6538..7750 | Clytia hemisphaerica | exon |
| TCONS_00043467-exon-sc0004258-1575043694:5356..6336 | TCONS_00043467-exon-sc0004258-1575043694:5356..6336 | Clytia hemisphaerica | exon |
| TCONS_00043467-exon-sc0004258-1510915933:6538..7750 | TCONS_00043467-exon-sc0004258-1510915933:6538..7750 | Clytia hemisphaerica | exon |
| TCONS_00043467-exon-sc0004258-1510915933:5356..6336 | TCONS_00043467-exon-sc0004258-1510915933:5356..6336 | Clytia hemisphaerica | exon |
| TCONS_00043467-exon-sc0004258-1491911889:6538..7750 | TCONS_00043467-exon-sc0004258-1491911889:6538..7750 | Clytia hemisphaerica | exon |
| TCONS_00043467-exon-sc0004258-1491911889:5356..6336 | TCONS_00043467-exon-sc0004258-1491911889:5356..6336 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004258 | supercontig | sc0004258:5356..7750 - |
Blast
The following BLAST results are available for this feature:
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