TCONS_00043459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043459
Unique NameTCONS_00043459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043459 ID=TCONS_00043459|Name=TCONS_00043459|organism=Clytia hemisphaerica|type=transcript|length=569bp
GCCAAACAGGACTTAGCAAGTCCATCTGGTTCATGGGCCAGACTTTGTTC
AAAATTCTCCAATCACGTACACGTCCAATAAAACGTTCAACATGTATTCG
TGTTGAAGCTATGTCGAAATTTCTATGTACTTCTTGTTGCGAAAACTGAT
CTTCGTCCTTTTGCTTAGGACGAttcaaaaaaattccttttataGAACAG
AGTTCTTGGACAGCAAAGCCTCTGTCGCTCATTAATTCGTGTTCTTCCTC
TATAAGATTCAAAATCCCAGCCTTCTCAGTTATATCTGAATCTGATATAG
ATCCTGGGTAAACATCACTAAACAATATACCCATTCCATGGGCAGCTATT
CCAATGAGGGCTTTACCAGTATGAGTGTTTTTATAGtgtgaaaacatcaa
agaattTATCTCATAATTTGTAGCACACTTAAATTTGAATTCTGTGGCAT
CAATAACTAGGTCGGTGTGTCCATGACCAGTGGTAACAAAACTTTCTGGC
ATTTTTTGCAGCAAAAAACCATGACCAGGGCGaagatcaatttttttgaa
aacagaaGCAGTAAAAATT
Run BLAST on NCBI

protein sequence of TCONS_00043459-protein

>TCONS_00043459-protein ID=TCONS_00043459-protein|Name=TCONS_00043459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
IFTASVFKKIDLRPGHGFLLQKMPESFVTTGHGHTDLVIDATEFKFKCAT
NYEINSLMFSHYKNTHTGKALIGIAAHGMGILFSDVYPGSISDSDITEKA
GILNLIEEEHELMSDRGFAVQELCSIKGIFLNRPKQKDEDQFSQQEVHRN
FDIASTRIHVERFIGRVRDWRILNKVWPMNQMDLLSPVW
Run BLAST on NCBI

transcript from alignment at sc0004238:3878..4446

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043459 ID=TCONS_00043459|Name=TCONS_00043459|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0004238:3878..4446 (Clytia hemisphaerica)
AATTTTTACTGCttctgttttcaaaaaaattgatcttCGCCCTGGTCATG
GTTTTTTGCTGCAAAAAATGCCAGAAAGTTTTGTTACCACTGGTCATGGA
CACACCGACCTAGTTATTGATGCCACAGAATTCAAATTTAAGTGTGCTAC
AAATTATGAGATAaattctttgatgttttcacaCTATAAAAACACTCATA
CTGGTAAAGCCCTCATTGGAATAGCTGCCCATGGAATGGGTATATTGTTT
AGTGATGTTTACCCAGGATCTATATCAGATTCAGATATAACTGAGAAGGC
TGGGATTTTGAATCTTATAGAGGAAGAACACGAATTAATGAGCGACAGAG
GCTTTGCTGTCCAAGAACTCTGTTCtataaaaggaatttttttgaaTCGT
CCTAAGCAAAAGGACGAAGATCAGTTTTCGCAACAAGAAGTACATAGAAA
TTTCGACATAGCTTCAACACGAATACATGTTGAACGTTTTATTGGACGTG
TACGTGATTGGAGAATTTTGAACAAAGTCTGGCCCATGAACCAGATGGAC
TTGCTAAGTCCTGTTTGGC

Coding sequence (CDS) from alignment at sc0004238:3878..4446

>TCONS_00043459 ID=TCONS_00043459|Name=TCONS_00043459|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0004238:3878..4446 (Clytia hemisphaerica)
ATTTTTACTGCttctgttttcaaaaaaattgatcttCGCCCTGGTCATGG
TTTTTTGCTGCAAAAAATGCCAGAAAGTTTTGTTACCACTGGTCATGGAC
ACACCGACCTAGTTATTGATGCCACAGAATTCAAATTTAAGTGTGCTACA
AATTATGAGATAaattctttgatgttttcacaCTATAAAAACACTCATAC
TGGTAAAGCCCTCATTGGAATAGCTGCCCATGGAATGGGTATATTGTTTA
GTGATGTTTACCCAGGATCTATATCAGATTCAGATATAACTGAGAAGGCT
GGGATTTTGAATCTTATAGAGGAAGAACACGAATTAATGAGCGACAGAGG
CTTTGCTGTCCAAGAACTCTGTTCtataaaaggaatttttttgaaTCGTC
CTAAGCAAAAGGACGAAGATCAGTTTTCGCAACAAGAAGTACATAGAAAT
TTCGACATAGCTTCAACACGAATACATGTTGAACGTTTTATTGGACGTGT
ACGTGATTGGAGAATTTTGAACAAAGTCTGGCCCATGAACCAGATGGACT
TGCTAAGTCCTGTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027155XLOC_027155Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043459-proteinTCONS_00043459-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043459-exon-sc0004238-1491911889:3878..4446TCONS_00043459-exon-sc0004238-1491911889:3878..4446Clytia hemisphaericaexon
TCONS_00043459-exon-sc0004238-1510915933:3878..4446TCONS_00043459-exon-sc0004238-1510915933:3878..4446Clytia hemisphaericaexon
TCONS_00043459-exon-sc0004238-1575043694:3878..4446TCONS_00043459-exon-sc0004238-1575043694:3878..4446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004238supercontigsc0004238:3878..4446 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.192202	0	0	0	0.105019	0.253401	0	0.0830456	0	0.399375	0.1969	0	0.204198	5.42808	3.7233	0.443883	0.606622	0	0.438495	0.571698	0.418282	0.790963	0.102729	0.105808	0	0	0	0	0.334329
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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