TCONS_00043458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043458
Unique NameTCONS_00043458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043458 ID=TCONS_00043458|Name=TCONS_00043458|organism=Clytia hemisphaerica|type=transcript|length=835bp
GTCCAGTCTGTTCCAGatacaaatgaaaatattaatgtTACTACTTCACA
AGATATAGCATTACAGAATCAAAGAAATGTATATGAAAATTCAtgtgaaa
attataaaatgacaagGGATGATATAAACATTAAAATGTTAAACACTCCT
ACTCCTACAAACAAGAAAGATTTAAAAACTATTGAACTAGACATTTGCTT
CTTGGAGGCACCTATTCCTGCTGGTTTAAATTATGTTAACACAGTACAAA
ATAGTCCAGAATGGCATGAAACAAGATCTAAAAAAATAACAGGCTCAAGA
CTTTCATCCCTTATTGGGTTACAAGGCAGTGTAAAGTTTAACGAGACATG
GAAAACCGTGAGAACCGGGCAAAAGGAAAAAGATATTTCTTGTTTCGAAA
ACATTAGACGTGGAATTGAATTTGAGAAGGACGGTGTTaaattttttgag
gaaaaatccAAATGTGTCACAAAAAGTTGTGGGTTTTTCTTCCACCCCGA
TGATAACCGCTTTGGAGCAAGCCCTGATGCTATCGGTCCAAATGGAATTC
TCgttgaaataaaaacaagagCAAAAGGCTGTAAAGAACCGCTGAAAAAT
TTTGTATCAAATGAGCACTACTTGGTACAATGTCAACTCCAAATGGCATG
CACTGACGCACACAGTTGTGTGCTGGTTTCCTATGTCCCAGAAAGCAAaa
caggaaatttttttatggtgCAGAGAAATAATACCATTATCGATATCCTC
ATGGACGTATGCAACAAACGAACACAAAAATCTTGGTAAAAAGTTATCAG
CTCGTACGTTGGATTTTGAGACATTAAAACCATTG
Run BLAST on NCBI

protein sequence of TCONS_00043458-protein

>TCONS_00043458-protein ID=TCONS_00043458-protein|Name=TCONS_00043458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
VQSVPDTNENINVTTSQDIALQNQRNVYENSCENYKMTRDDINIKMLNTP
TPTNKKDLKTIELDICFLEAPIPAGLNYVNTVQNSPEWHETRSKKITGSR
LSSLIGLQGSVKFNETWKTVRTGQKEKDISCFENIRRGIEFEKDGVKFFE
EKSKCVTKSCGFFFHPDDNRFGASPDAIGPNGILVEIKTRAKGCKEPLKN
FVSNEHYLVQCQLQMACTDAHSCVLVSYVPESKTGNFFMVQRNNTIIDIL
MDVCNKRTQKSW
Run BLAST on NCBI

transcript from alignment at sc0004238:4863..5836-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043458 ID=TCONS_00043458|Name=TCONS_00043458|organism=Clytia hemisphaerica|type=transcript|length=974bp|location=Sequence derived from alignment at sc0004238:4863..5836- (Clytia hemisphaerica)
GTCCAGTCTGTTCCAGATACAAATGAAAATATTAATGTTACTACTTCACA
AGATATAGCATTACAGAATCAAAGAAATGTATATGAAAATTCATGTGAAA
ATTATAAAATGACAAGGGATGATATAAACATTAAAATGTTAAACACTCCT
ACTCCTACAAACAAGAAAGATTTAAAAACTATTGAACTAGACATTTGCTT
CTTGGAGGCACCTATTCCTGCTGGTTTAAATTATGTTAACACAGTACAAA
ATAGTCCAGAATGGCATGAAACAAGATCTAAAAAAATAACAGGCTCAAGA
CTTTCATCCCTTATTGGGTTACAAGGCAGTGTAAAGTTTAACGAGACATG
GAAAACCGTGAGAACCGGGCAAAAGGAAAAAGATATTTCTTGTTTCGAAA
ACATTAGACGTGGAATTGAATTTGAGAAGGACGGTGTTAAATTTTTTGAG
GAAAAATCCAAATGTGTCACAAAAAGTTGTGGGTTTTTCTTCCACCCCGA
TGATAACCGCTTTGGAGCAAGCCCTGATGCTATCGGTCCAAATGGAATTC
TCGTTGAAATAAAAACAAGAGCAAAAGGCTGTAAAGAACCGCTGAAAAAT
TTTGTATCAAATGAGCACTACTTGGTACAATGTCAACTCCAAATGGCATG
CACTGACGCACACAGTTGTGTGCTGGTTTCCTATGTCCCAGAAAGCAAAA
CAGGAAATTTTTTTATGGTGCAGAGAAATAATACCATTATCGATATCCTC
ATGGACGTATGCAATGCCATNCCTATGTCCCAGAAAGCAAAACAGGAAAT
TTTTTTATGGTGCAGAGAAATAATACCATTATCGATATCCTCATGGACGT
ATGCAATGCCATTTGGAGCAACAAAGTTATCGAAACCTGGTCCTACACTG
ACACAAACGAACACAAAAATCTTGGTAAAAAGTTATCAGCTCGTACGTTG
GATTTTGAGACATTAAAACCATTG

Coding sequence (CDS) from alignment at sc0004238:4863..5836-

>TCONS_00043458 ID=TCONS_00043458|Name=TCONS_00043458|organism=Clytia hemisphaerica|type=CDS|length=1578bp|location=Sequence derived from alignment at sc0004238:4863..5836- (Clytia hemisphaerica)
ACAAACGAACACAAAAATCTTGGTAAGTCCAGTCTGTTCCAGATACAAAT
GAAAATATTAATGTTACTACTTCACAAGATATAGCATTACAGAATCAAAG
AAATGTATATGAAAATTCATGTGAAAATTATAAAATGACAAGGGATGATA
TAAACATTAAAATGTTAAACACTCCTACTCCTACAAACAAGAAAGATTTA
AAAACTATTGAACTAGACATTTGCTTCTTGGAGGCACCTATTCCTGCTGG
TTTAAATTATGTTAACACAGTACAAAATAGTCCAGAATGGCATGAAACAA
GATCTAAAAAAATAACAGGCTCAAGACTTTCATCCCTTATTGGGTTACAA
GGCAGTGTAAAGTTTAACGAGACATGGAAAACCGTGAGAACCGGGCAAAA
GGAAAAAGATATTTCTTGTTTCGAAAACATTAGACGTGGAATTGAATTTG
AGAAGGACGGTGTTAAATTTTTTGAGGAAAAATCCAAATGTGTCACAAAA
AGTTGTGGGTTTTTCTTCCACCCCGATGATAACCGCTTTGGAGCAAGCCC
TGATGCTATCGGTCCAAATGGAATTCTCGTTGAAATAAAAACAAGAGCAA
AAGGCTGTAAAGAACCGCTGAAAAATTTTGTATCAAATGAGCACTACTTG
GTACAATGTCAACTCCAAATGGCATGCACTGACGCACACAGTTGTGTGCT
GGTTTCCTATGTCCCAGAAAGCAAAACAGGAAATTTTTTTATGGTGCAGA
GAAATAATACCATTATCGATATCCTCATGGACGTATGCAACAAACGAACA
CAAAAATCTTGGTAAGTCCAGTCTGTTCCAGATACAAATGAAAATATTAA
TGTTACTACTTCACAAGATATAGCATTACAGAATCAAAGAAATGTATATG
AAAATTCATGTGAAAATTATAAAATGACAAGGGATGATATAAACATTAAA
ATGTTAAACACTCCTACTCCTACAAACAAGAAAGATTTAAAAACTATTGA
ACTAGACATTTGCTTCTTGGAGGCACCTATTCCTGCTGGTTTAAATTATG
TTAACACAGTACAAAATAGTCCAGAATGGCATGAAACAAGATCTAAAAAA
ATAACAGGCTCAAGACTTTCATCCCTTATTGGGTTACAAGGCAGTGTAAA
GTTTAACGAGACATGGAAAACCGTGAGAACCGGGCAAAAGGAAAAAGATA
TTTCTTGTTTCGAAAACATTAGACGTGGAATTGAATTTGAGAAGGACGGT
GTTAAATTTTTTGAGGAAAAATCCAAATGTGTCACAAAAAGTTGTGGGTT
TTTCTTCCACCCCGATGATAACCGCTTTGGAGCAAGCCCTGATGCTATCG
GTCCAAATGGAATTCTCGTTGAAATAAAAACAAGAGCAAAAGGCTGTAAA
GAACCGCTGAAAAATTTTGTATCAAATGAGCACTACTTGGTACAATGTCA
ACTCCAAATGGCATGCACTGACGCACACAGTTGTGTGCTGGTTTCCTATG
TCCCAGAAAGCAAAACAGGAAATTTTTTTATGGTGCAGAGAAATAATACC
ATTATCGATATCCTCATGGACGTATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027154XLOC_027154Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043458-proteinTCONS_00043458-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043458-exon-sc0004238-1575043694:5074..5836TCONS_00043458-exon-sc0004238-1575043694:5074..5836Clytia hemisphaericaexon
TCONS_00043458-exon-sc0004238-1575043694:4863..4934TCONS_00043458-exon-sc0004238-1575043694:4863..4934Clytia hemisphaericaexon
TCONS_00043458-exon-sc0004238-1510915933:5074..5836TCONS_00043458-exon-sc0004238-1510915933:5074..5836Clytia hemisphaericaexon
TCONS_00043458-exon-sc0004238-1510915933:4863..4934TCONS_00043458-exon-sc0004238-1510915933:4863..4934Clytia hemisphaericaexon
TCONS_00043458-exon-sc0004238-1491911889:5074..5836TCONS_00043458-exon-sc0004238-1491911889:5074..5836Clytia hemisphaericaexon
TCONS_00043458-exon-sc0004238-1491911889:4863..4934TCONS_00043458-exon-sc0004238-1491911889:4863..4934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004238supercontigsc0004238:4863..5836 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170021	0.165797	0	0	0	0	0	0.0682135	0.0955157	0	0	0.0377444	0	0	3.44339	1.79584	0.0850895	0.697712	0.421718	0.126085	0.109591	0.0801818	0.064981	0.118154	0	0	0	0	0.0629034	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011604Exonuc_phg/RecB_C
IPR019080YqaJ_viral_recombinase
IPR011335Restrct_endonuc-II-like
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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