TCONS_00043453 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043453
Unique Name	TCONS_00043453
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	397

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0004234:5958..7713+
coding sequence from alignment at sc0004234:5958..7713+

transcript sequence

>TCONS_00043453 ID=TCONS_00043453|Name=TCONS_00043453|organism=Clytia hemisphaerica|type=transcript|length=397bp
TGGTATAATATTGGATAATGTTTGTCGAAAGAGAACAAAACATATCTGGT
TCAGCATCTCAAGTGATCTAAAACACGATGCTGAaagAGATTTGCGCGAT
ATCGGATGCTATGTTAAGGTCATTGATGGATGTCAGCAATTAGACCAAAA
AACAAAGACATTTGGATTATCTTCAGAGTACAAAGAAGGGGTTGTATTCT
CGACTTACTCCACCCTGGTCTCCTCTAGTCAAAAAGATTCCAAGAAAACA
TGTCGTCTGGACCAACTAATTGAATGGTGTGGAAAAGACTTCGATGGATG
TCTAATCTTTGACGAATCACATAAAGCGAAACATTTTATGCCTGGTAAAG
AGAAATCGAGTACAAAAGTAGCAGTAGCTGTAACTAATATTCAAAGG

Run BLAST on NCBI

protein sequence of TCONS_00043453-protein

>TCONS_00043453-protein ID=TCONS_00043453-protein|Name=TCONS_00043453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
GIILDNVCRKRTKHIWFSISSDLKHDAERDLRDIGCYVKVIDGCQQLDQK
TKTFGLSSEYKEGVVFSTYSTLVSSSQKDSKKTCRLDQLIEWCGKDFDGC
LIFDESHKAKHFMPGKEKSSTKVAVAVTNIQR

Run BLAST on NCBI

transcript from alignment at sc0004234:5958..7713+

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043453 ID=TCONS_00043453|Name=TCONS_00043453|organism=Clytia hemisphaerica|type=transcript|length=1756bp|location=Sequence derived from alignment at sc0004234:5958..7713+ (Clytia hemisphaerica)
TGGTATAATATTGGATAATGTTTGTCGAAAGAGAACAAAACATATCTGGT
TCAGCATCTCAAGTGATCTAAAACACGATGCTGAaaggtattttgatttt
aaaggttttcttttcataagtgttcccatttcatatcagacacatatttc
atctcaggacagtgtctgcctattgttatattattctgatataagcaaaa
aatgtttttcatttcctctttctgagcaaacttgctccacatccgtgtca
atcaaatgtgaaaaagcttgtaaaataaaattgaagatagcaaacgatat
cactcttatttaaaaacaaaacctttaaggaaTTTAAATGTTCACTCAAT
GCATAGCAAATGGTACAAATACTGGCTATAGCGTGCAACAACCTTATTTC
AAAAGTGAGCCACCTAATTAAGTACTTGAGTCATATACTTTGACTCATGA
CAATTGTTTTTAGAAATAGCATGTTCATTTGGTAGAGCAGATATACATCT
TGAGCATATGCCTGGATTTCTTATACTCACTTTGTTTGAATTTGTTATTC
TTTATCACTGTAGCGTTCTAAAGAATTgtaaaaacatttgttttttaGAG
ATTTGCGCGATATCGGATGCTATGTTAAGGTCATTGATGGATGTCAGCAA
TTAGACCAAAAAACAAAGTATTTATGCTTTTTCGATTGAATAGAATCTGT
CTAGCGTATTTTTACTTCCTTCTATCTATTTAATCCTAAGTAATAGGCTC
AATAGTTTTTACATTCTCTTATGCGCTTTTTTGCTGGTTTATGTTGAGAT
CTTTTTGGGGGAGTAGGTATTATTTACTGTATATTGAGGGTTTTATTCTT
TTTCAGGACATTTGGATTATCTTCAGAGTACAAAGAAGGGGTTGTATTCT
CGACTTACTCCACCCTGGTCTCCTCTAGTCAAAAAGGTATTGCAAGCTTA
ACAAATATTTACAACATAAAATGGGTATCAATCTAGCAGTTGATGAATCT
TGATTTTCATCATTAGTCAAATTCttgatatttatgacgtaatctttgat
acggaaacacccgaaaaacaccaggcgtttgccaccagtttcGAATTTAA
ACAATGAAAAGATTACACTATGAATATCAAGAATCGGTGGGTAGAgctat
tttcactattttgcaTCTCGATTCTAATGGCTTTCATTTTTTACGAATAN
AGCTATTTTCACTATCTCGCATCTCTATTTCTATGGCcttcaatttttta
caaattgaaactttttgttTAGATTCCAAGAAAACATGTCGTCTGGACCA
ACTAATTGAATGGTGTGGAAAAGACTTCGATGGATGTCTAATCTTTGACG
AATCACATAAAGCGAAACATTTTATGCCTGTAAGCGGAAGGATTTAGCTT
GTCAAATCTTTTGGTTTATAATAATAACAAGAAACCGTTTTGGGAAATTT
AgagatgaaatttaaaaataacatCGTTTACCAGTATCAGCTTTTCCTAT
ATACTCGCAAGAGAATCGCTCCTACAAGCCATAACTAACTTTATAACCTC
TCTTACAGCCCGTTTCCCGATTTTTGTTAGTCAGCATTGATTTACTTGTT
AAcggattttttaaatttcatcattccATACAAAGCCCCAACTTTTCTTG
GTACTTTTTCGACTTTTGTTTTTCTAGAGTTTTGACATTATCTTTCTTAT
AGGGTAAAGAGAAATCGAGTACAAAAGTAGCAGTAGCTGTAACTAATATT
CAAAGG

Coding sequence (CDS) from alignment at sc0004234:5958..7713+

>TCONS_00043453 ID=TCONS_00043453|Name=TCONS_00043453|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at sc0004234:5958..7713+ (Clytia hemisphaerica)
GGTATAATATTGGATAATGTTTGTCGAAAGAGAACAAAACATATCTGGTT
CAGCATCTCAAGTGATCTAAAACACGATGCTGAaagAGATTTGCGCGATA
TCGGATGCTATGTTAAGGTCATTGATGGATGTCAGCAATTAGACCAAAAA
ACAAAGACATTTGGATTATCTTCAGAGTACAAAGAAGGGGTTGTATTCTC
GACTTACTCCACCCTGGTCTCCTCTAGTCAAAAAGATTCCAAGAAAACAT
GTCGTCTGGACCAACTAATTGAATGGTGTGGAAAAGACTTCGATGGATGT
CTAATCTTTGACGAATCACATAAAGCGAAACATTTTATGCCTGGTAAAGA
GAAATCGAGTACAAAAGTAGCAGTAGCTGTAACTAATATTCAAAGGGGTA
TAATATTGGATAATGTTTGTCGAAAGAGAACAAAACATATCTGGTTCAGC
ATCTCAAGTGATCTAAAACACGATGCTGAaagAGATTTGCGCGATATCGG
ATGCTATGTTAAGGTCATTGATGGATGTCAGCAATTAGACCAAAAAACAA
AGACATTTGGATTATCTTCAGAGTACAAAGAAGGGGTTGTATTCTCGACT
TACTCCACCCTGGTCTCCTCTAGTCAAAAAGATTCCAAGAAAACATGTCG
TCTGGACCAACTAATTGAATGGTGTGGAAAAGACTTCGATGGATGTCTAA
TCTTTGACGAATCACATAAAGCGAAACATTTTATGCCTGGTAAAGAGAAA
TCGAGTACAAAAGTAGCAGTAGCTGTAACTAATATTCAAAGGGGTATAAT
ATTGGATAATGTTTGTCGAAAGAGAACAAAACATATCTGGTTCAGCATCT
CAAGTGATCTAAAACACGATGCTGAaagAGATTTGCGCGATATCGGATGC
TATGTTAAGGTCATTGATGGATGTCAGCAATTAGACCAAAAAACAAAGAC
ATTTGGATTATCTTCAGAGTACAAAGAAGGGGTTGTATTCTCGACTTACT
CCACCCTGGTCTCCTCTAGTCAAAAAGATTCCAAGAAAACATGTCGTCTG
GACCAACTAATTGAATGGTGTGGAAAAGACTTCGATGGATGTCTAATCTT
TGACGAATCACATAAAGCGAAACATTTTATGCCTGGTAAAGAGAAATCGA
GTACAAAAGTAGCAGTAGCTGTAACTAATATTCAAAGGGGTATAATATTG
GATAATGTTTGTCGAAAGAGAACAAAACATATCTGGTTCAGCATCTCAAG
TGATCTAAAACACGATGCTGAaagAGATTTGCGCGATATCGGATGCTATG
TTAAGGTCATTGATGGATGTCAGCAATTAGACCAAAAAACAAAGACATTT
GGATTATCTTCAGAGTACAAAGAAGGGGTTGTATTCTCGACTTACTCCAC
CCTGGTCTCCTCTAGTCAAAAAGATTCCAAGAAAACATGTCGTCTGGACC
AACTAATTGAATGGTGTGGAAAAGACTTCGATGGATGTCTAATCTTTGAC
GAATCACATAAAGCGAAACATTTTATGCCTGGTAAAGAGAAATCGAGTAC
AAAAGTAGCAGTAGCTGTAACTAATATTCAAAGGGGTATAATATTGGATA
ATGTTTGTCGAAAGAGAACAAAACATATCTGGTTCAGCATCTCAAGTGAT
CTAAAACACGATGCTGAaagAGATTTGCGCGATATCGGATGCTATGTTAA
GGTCATTGATGGATGTCAGCAATTAGACCAAAAAACAAAGACATTTGGAT
TATCTTCAGAGTACAAAGAAGGGGTTGTATTCTCGACTTACTCCACCCTG
GTCTCCTCTAGTCAAAAAGATTCCAAGAAAACATGTCGTCTGGACCAACT
AATTGAATGGTGTGGAAAAGACTTCGATGGATGTCTAATCTTTGACGAAT
CACATAAAGCGAAACATTTTATGCCTGGTAAAGAGAAATCGAGTACAAAA
GTAGCAGTAGCTGTAACTAATATTCAAAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_027149	XLOC_027149	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043453-protein	TCONS_00043453-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0004234	supercontig	sc0004234:5958..7713 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.161	4.14836	0	0.366625	0.348485	0	0.34744	0	0.820822	2.29766	2.86716	1.26027	2.99379	4.00158	2.44173	5.02152	1.99274	3.11693	0.745717	2.10732	3.57541	0.77679	3.80495	3.60142	0	0.114536	1.64018	2.88867	5.90478	2.70635

Blast

[Close]

BLAST of TCONS_00043453 vs. Swiss-Prot (Human)
Match: SBNO1 (Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.069e-32
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 2

Query:    2 GIILDNVCRKRTKHIWFSISSDLKHDAERDLRDIGCYVKVIDGCQQLDQKTKTFGLSSEYKEGVVFSTYSTLVSSSQKDSKKTCRLDQLIEWCGKDFDGCLIFDESHKAKHFMPGKEKSSTKVAVAVTNIQ 394
            GII +N    R + +WFS+S+DLK+DAERDLRDIG    ++    +      +   +   K+GV+F+TYS+L+  SQ   K   RL QL+ WCG DFDG ++FDE HKAK+  P      TK  +AV  +Q
Sbjct:  333 GIIYENYLLSRKRALWFSVSNDLKYDAERDLRDIGAKNILVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRLKQLLHWCGDDFDGVIVFDECHKAKNLCPVGSSKPTKTGLAVLELQ 463

The following BLAST results are available for this feature:

BLAST of TCONS_00043453 vs. Swiss-Prot (Human)

BLAST of TCONS_00043453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SBNO1	6.069e-32	43.51	Protein strawberry notch homolog 1 OS=Homo sapiens...	[more]

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TCONS_00043453 (transcript) - C. hemisphaerica