TCONS_00043450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043450
Unique NameTCONS_00043450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043450 ID=TCONS_00043450|Name=TCONS_00043450|organism=Clytia hemisphaerica|type=transcript|length=313bp
tttaggtatctggaactaaagaaaatttaaatataaataaataataaccg
gtgattataaaaacaaaaatgatatttaAGATTTCTTTGGTGGTATTCTT
GTTGTCTTTACACAATGTTGGATGTGATGTGTTACATGAAGTCAAGCAAT
ACGAAGAATTGAAAGCACTTTTAAGCTTGGATGACGCAGTTGGTGTATTT
TATTATACTCACAATGCCGCCTCAGAATTCAAAAGCAGAACACTTCAAAT
CATGGGTAAAGTACAAGACAGGATGAAGAAATCAGGCAAATATTGGATCA
GGCTTATCAAGGT
Run BLAST on NCBI

transcript from alignment at sc0004233:4609..6597+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043450 ID=TCONS_00043450|Name=TCONS_00043450|organism=Clytia hemisphaerica|type=transcript|length=1989bp|location=Sequence derived from alignment at sc0004233:4609..6597+ (Clytia hemisphaerica)
tttaggtatctggaactaaagaaaatttaaatataaataaataataaccg
gtgattataaaaacaaaaatgatatttaAGATTTCTTTGGTGGTATTCTT
GTTGTCTTTACACAATGTTGGATGTGATGTGTTACATGAAGTCAAGCAAT
ACGAAGAATTGAAAGCACTTTTAAGCTTGGATGACGCAGTTGGTGTATTT
TATTATACTCACAATGCCGCCTCAGAATTCAAAAGTAAgtattattgatt
tttttaagaCTTTCCTTGGAtctctttgaaataagtttttctgTGTCTTG
AAACTTTTCTAGCTGACAAATAACTTAGCTTTTAGCAATACTCTTTTAGA
CTTTTTCTGTTCAAAAAAGTATCTACTTGGGTGCCTCAGAATTCTAAAGT
AAGTATTATTGatgtttaaaggttttatttttccaaaagtgttcccgttt
catatcagacacatatttcatatcaggacagtgtcttactattgttatat
tatgctgatataagcaaaaaactgCTTTACTTTTCCTGTTTCTGGCTAAC
CTTGCTCCACAACCGTGTCAATCTAATGTGAAAaggcttgtgaattaaaa
ttgataaataagcaaatgatatcactcttatttaaaaacaaagcctTGGA
TACTTTCCTGGCATCCCTTTAAAATAAGATTTATGTcttgaaactttttt
tagaAGTGATTAACAAATAACTTAGCTTAGCAATATTCCTTTAGGCGAAT
GCGACGATCTATTGCATAACTAAACTTCAGTGGATGCAAATAAAACAATT
GGGAAATTAGATATTACCAATGAATAAATTTTGTTCAAGTTAGCACACCG
cagtgattctaaaaatagacatcaaaattactgtttctctgagttttaat
cccatcatcctttgcattaattgcttttgTAAGTCAATTTTGTCACTTTT
GGACAATACAAAAGTAATAACGAATCAAGATGAAAAGGATTGTGGGATTG
AATCTCGGTCAGGTTATTTCCGTAATACGGAGCAGATAATTTCCGGCCCG
AACGACTGGAGTAATTTAATATGCGGAACTGAGTCAATAGGTATCGCGTT
CTCTCAAACGACTATTATGCTCTTTTAATTCCTTCCACTAGACTCTCTGA
CCATCTATATCTCTTGTTTCTGATGACTTGAATGTATCGGCCTTCCATAT
AATAAGAATGGTGTCCAGTTTTAGAGCTTACTACACTCAGGGACGAAAAT
GATGAGACAAGAGCATAATATAAGCCGACTTTCTGCCCTGCTTATTCTAA
TTGTTGACCAGGCAGAAAGTGGCCACGAAGTTGGCAATTAAAATCTTTGC
TTGAAAAAGATTGAAAGAAGCCATTGCATTGATGTCAAAAGAGGGGAAAT
TGATTGACTTAAGACAGCCCACTTTATAATTAAAATAGGCAGGGTGAAAA
GTGGGCCGTCTAAACTAGAGCTAAGCTTCACCCCCTCCCTCCCCCAGTGG
CAATGTTGAATGTCGCTTGGGACGGCTGTTCGCACTCAACATTGCCATTG
GGAAAAAGGTGGGACCTTTCCATTGTTAATTTCCAGCATTTTCCAGTGTT
TTTTCGCAAACATTAAAGACATTAAAGTCCGTGATTGTAGTCCTGCTATC
TTGCTTTCAATTTTCAATATTCCCAATGGGGATAGAAAATCTATTGTTCT
GAGCTTAAAATATCCAGTGGGGATGGTTTCGTAGGGTATTTTGTCCACCG
AGGACGAAATTTAGGCAAAAACTTTCAGTGAGGCTAAAGTCCCAGCGGGT
CTGTGACACAGGGGTGTCATTGTTTTCAAGGAGATCATAGCCAGTTGGAT
CGACTATGTATTGGTCAACTTTATATTTCTAATTGCTCATCATGACCCTA
TTTTTTATAGGCAGAACACTTCAAATCATGGGTAAAGTACAAGACAGGAT
GAAGAAATCAGGCAAATATTGGATCAGGCTTATCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027146XLOC_027146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043450-exon-sc0004233-1491911889:4609..4842TCONS_00043450-exon-sc0004233-1491911889:4609..4842Clytia hemisphaericaexon
TCONS_00043450-exon-sc0004233-1510915933:4609..4842TCONS_00043450-exon-sc0004233-1510915933:4609..4842Clytia hemisphaericaexon
TCONS_00043450-exon-sc0004233-1575043694:4609..4842TCONS_00043450-exon-sc0004233-1575043694:4609..4842Clytia hemisphaericaexon
TCONS_00043450-exon-sc0004233-1491911889:6519..6597TCONS_00043450-exon-sc0004233-1491911889:6519..6597Clytia hemisphaericaexon
TCONS_00043450-exon-sc0004233-1510915933:6519..6597TCONS_00043450-exon-sc0004233-1510915933:6519..6597Clytia hemisphaericaexon
TCONS_00043450-exon-sc0004233-1575043694:6519..6597TCONS_00043450-exon-sc0004233-1575043694:6519..6597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004233supercontigsc0004233:4609..6597 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.963	11.3746	5.90842	4.19433	26.5322	20.857	58.0642	59.0981	26.8516	32.175	27.9244	26.0819	32.446	24.7237	19.5413	22.0905	17.0788	16.7993	18.5707	31.0052	32.8296	34.3689	15.343	21.9601	45.4869	48.9768	27.428	18.8504	13.2836	10.7011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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