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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043448 ID=TCONS_00043448|Name=TCONS_00043448|organism=Clytia hemisphaerica|type=transcript|length=2917bp
GTGGACTTTGGCAAACCAATCGGCTTACCTTTTTGTGCTGCTGGTGGTGG
TCCTTGTCCAGATGGATGTATGATGAAATTTGGCACTGGTTTTGGCGGCA
TGAAAGGATGAGGTTCTGCAGGATTTGGCTTGATGGGAAGATAGAAATAT
TGTTGATTTGGTGGGGGTTGCATCAATGTTGGTGGCTGTGGAAACTGCAT
CAGCATTTGTTGAGGTAACTGCACACAACCAAAAGGTAGCTGCTGGGTTG
ATGTTGTTGTGGCGGATGGCATCAGTGATGGTGGTGGGGGTGGCGAAAGC
TGTGGTGATTTTTGCATTGGTTGGGTTTCTTCTGGTGGTTGTTGGGTTGA
TGCTGAAGCAGGTGGCGGCGGTGGTGACAGTGATAGAGGATCCGGGAGAA
CATCAGTTGGCAAGAAGTGGACAGGGCTGGTACTGATTTTGTCTGTGTCC
GTTGTTCGCNTGATGCTGAAGCAGGTGGCGGCGGTGGTGACAGTGATAGA
GGATCCGGGAGAACATCAGTTGGCAAGAAGTGGACAGGGCTGGTACTGAT
TTTGTCTGTGTCCGTTGTTCGCTGAATTCTTTTCCTCTTCACCTGGCCGA
TCTTGTCTTCTGCATCAGTAAAGGTGACCAGGGGAGCATCATGCGACAAG
TCCATTTGGTTCAATCCCATCTTTTTCTTCGTTGTTGTAAAACTGAGGTG
GGATGGTATCGGTCGTCCTTTCATCAGCTCTGTCACTTCTTCAACGCGCA
CCTTGTTTTTAAACCACTTGGATAATGTTGTTTGGTTAACGTTGAAGAGG
GTGATCGAGGTCTGTTCTTTCAGGGATTTGCTGTTGAAAACTCGGGCACG
TAAGTTGTTGTATTCTTCCAAGATGAGCTTAAGACGGGAAGCAAACTTGG
CCTTTTTCTTCCCAGGATGATCTGTGATGGTAGTGCCGGTATGGTGTCTG
CTGCACAACTTTACAAAAATAGCTTCCACTATTCTATTTTTGGAGGGTTG
GAAGGCAGGACTGCCACCGGTGAGAAAACATCTTCTCATTGCAATCTCTC
GAGCAGCAGCATGACCAGACATTCTCTTCTTTCGTTGGAATCGGCCAGAA
GCAGGCTTCATCTTCACTGGTTGCCAGACCATGGCTTTCTTGTCAAACTC
ATCAAGCTGATTGAACGAGGCGACGATGTTGGCTGCAGACGAAGGCAGAA
TGCTGATTCCCTTCTGCGCAAGTAGCATATCAGTCAGCTTGTCGATTTTG
TCCCAACCAGGTATGCCACGATGATCGCACACTTCTTCCTGGCTATCCTG
ACTCTGGCTTCGGCTGCTCTGGCTGTCATCTTCATCCTCAATCTCCTCAT
CAGACACTTCCTTGACCATCCCGGTGTTCTTCAAAGGGTTATCGTTGTCA
ACAAATACAAAGTCAACACTGTCATGACAGCTGTACATACCCATGGTCAA
ACCCCCATCAGATTCAACCCCAGAGTCCTCAATCCCGTCGTCAACCTCTT
TCTCCACAGTTGACATCTTAAAGTTTTCTTGCTTCAAGTACTCCACACCG
AAAAGCTCATTTATTTTGGCTGATGGTTTTGGCTTGCCGACAAGCGGTTT
GTCAAAAATCTGTGTGTGGAGGGCGTCAACTTTGGCACATAGCTCTGCCT
CGAACGTACGGAAGGAAGAGACTGAATTGATTGCGTTGTTTTGGTCGGCA
TTTTGAACATCTTCTTTGCGAGCTTCGTTCCATCTTGCCAATCCAGCTAA
CAGATATGCTTGGAAGTTCACCCCGTTTGCTGATGTACCTGGAATAAAAT
TGACAATGTGGCTGTGAAAAGACTCAAGCGAAACTGTCCCTCTTGCACAT
CGATAGAGTGGAAGTTGGATGTCACCTTTCTTTGTTGTGCCAATTTTGGT
GTAGAGGTCAATGGAAACAGGATCTTGGATACATGCGACGTGTCTACGTT
CCACTTCCCAGATCTCAACCATTTTGTCGGTGAAAAGTGGGGTCCCAAGA
GAGTCCGTTGCACCGGTAAAATGCAGAATCAGGTCGTCTATCAGCCTCTC
TGTTTCGTACTCTCCCCTTGTCATTCTTCTCACGTGACGTTGCATCTCTG
CTTTGGTCAGGTATTGCTTGACGGTTGCATCAGATGGTGTTTTGTTGCCT
TCTTTCTTGAGGGCTTGCCGTTTAGCTTCCATCAACTTCTTGTAATCATC
CTCATTCCATTTGAATATGCACCCAGACAGAAGAGACATAAAGGTTTGGT
ACAGTGGATGAGATTCAGAATGTACGCCACATACCAGCCTGTGCATAAAG
TGCCAAATGGCGAGGCGGACCAACAATTTCAGCCATTCCATAATCATTGC
ATCTCTTTCCTTGTCTTCTTTGCTGTCACCTCCAGTCAAGAGATCTTCAA
TATCACTGAAAAGCTCCTGCATTTTAGAATTGCCACTTGCATTGCAACAA
TCCCGATCGGTATACAATACTTTTGGGGGATGGGCGTTGGCAGTTGCATA
ACGGCCCATGATTCCATTGGCCATCGGTCTCAGACTGTCAATGGATTCTG
AAGAGGTCAGCACACACTGGAGGACTCCGCCATACTCATTACCAACATTT
GTGCACCAATCAGCTGTGTTCTTATCATAACCAGCCAGCTTCTTAAGGAT
CTTCTTGGTCGAATCGATCTTGAGAACTTTTCCAAAGACAGAGGTGATGG
AGCCTTTTAAGATGTTGGAACGGTACATTACGTCATGAGCATACGTGGAA
AGAAACCATTTCGGTGTTGGTACAGATTTTCTAGCTGGCAGTTCTTGAAA
GTTGAGGTTCAAAGGAGCAAACTTTGTATCTCTTTCCTTGTAGCGCTTGC
AGTCCTGTAGATACTTGGCAGCGTTCCTCAAGTAGCTTTCACTGTGTACC
TCGTCGATGGTCTTTTG Run BLAST on NCBI protein sequence of TCONS_00043448-protein >TCONS_00043448-protein ID=TCONS_00043448-protein|Name=TCONS_00043448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=881bp
QKTIDEVHSESYLRNAAKYLQDCKRYKERDTKFAPLNLNFQELPARKSVP
TPKWFLSTYAHDVMYRSNILKGSITSVFGKVLKIDSTKKILKKLAGYDKN
TADWCTNVGNEYGGVLQCVLTSSESIDSLRPMANGIMGRYATANAHPPKV
LYTDRDCCNASGNSKMQELFSDIEDLLTGGDSKEDKERDAMIMEWLKLLV
RLAIWHFMHRLVCGVHSESHPLYQTFMSLLSGCIFKWNEDDYKKLMEAKR
QALKKEGNKTPSDATVKQYLTKAEMQRHVRRMTRGEYETERLIDDLILHF
TGATDSLGTPLFTDKMVEIWEVERRHVACIQDPVSIDLYTKIGTTKKGDI
QLPLYRCARGTVSLESFHSHIVNFIPGTSANGVNFQAYLLAGLARWNEAR
KEDVQNADQNNAINSVSSFRTFEAELCAKVDALHTQIFDKPLVGKPKPSA
KINELFGVEYLKQENFKMSTVEKEVDDGIEDSGVESDGGLTMGMYSCHDS
VDFVFVDNDNPLKNTGMVKEVSDEEIEDEDDSQSSRSQSQDSQEEVCDHR
GIPGWDKIDKLTDMLLAQKGISILPSSAANIVASFNQLDEFDKKAMVWQP
VKMKPASGRFQRKKRMSGHAAAREIAMRRCFLTGGSPAFQPSKNRIVEAI
FVKLCSRHHTGTTITDHPGKKKAKFASRLKLILEEYNNLRARVFNSKSLK
EQTSITLFNVNQTTLSKWFKNKVRVEEVTELMKGRPIPSHLSFTTTKKKM
GLNQMDLSHDAPLVTFTDAEDKIGQVKRKRIQRTTDTDKISTSPVHFLPT
DVLPDPLSLSPPPPPASASXEQRTQTKSVPALSTSCQLMFSRILYHCHHR
RHLLQHQPNNHQKKPNQCKNHHSFRHPHHHH Run BLAST on NCBI transcript from alignment at sc0004229:2788..5704 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043448 ID=TCONS_00043448|Name=TCONS_00043448|organism=Clytia hemisphaerica|type=transcript|length=2917bp|location=Sequence derived from alignment at sc0004229:2788..5704 (Clytia hemisphaerica)
CAAAAGACCATCGACGAGGTACACAGTGAAAGCTACTTGAGGAACGCTGC
CAAGTATCTACAGGACTGCAAGCGCTACAAGGAAAGAGATACAAAGTTTG
CTCCTTTGAACCTCAACTTTCAAGAACTGCCAGCTAGAAAATCTGTACCA
ACACCGAAATGGTTTCTTTCCACGTATGCTCATGACGTAATGTACCGTTC
CAACATCTTAAAAGGCTCCATCACCTCTGTCTTTGGAAAAGTTCTCAAGA
TCGATTCGACCAAGAAGATCCTTAAGAAGCTGGCTGGTTATGATAAGAAC
ACAGCTGATTGGTGCACAAATGTTGGTAATGAGTATGGCGGAGTCCTCCA
GTGTGTGCTGACCTCTTCAGAATCCATTGACAGTCTGAGACCGATGGCCA
ATGGAATCATGGGCCGTTATGCAACTGCCAACGCCCATCCCCCAAAAGTA
TTGTATACCGATCGGGATTGTTGCAATGCAAGTGGCAATTCTAAAATGCA
GGAGCTTTTCAGTGATATTGAAGATCTCTTGACTGGAGGTGACAGCAAAG
AAGACAAGGAAAGAGATGCAATGATTATGGAATGGCTGAAATTGTTGGTC
CGCCTCGCCATTTGGCACTTTATGCACAGGCTGGTATGTGGCGTACATTC
TGAATCTCATCCACTGTACCAAACCTTTATGTCTCTTCTGTCTGGGTGCA
TATTCAAATGGAATGAGGATGATTACAAGAAGTTGATGGAAGCTAAACGG
CAAGCCCTCAAGAAAGAAGGCAACAAAACACCATCTGATGCAACCGTCAA
GCAATACCTGACCAAAGCAGAGATGCAACGTCACGTGAGAAGAATGACAA
GGGGAGAGTACGAAACAGAGAGGCTGATAGACGACCTGATTCTGCATTTT
ACCGGTGCAACGGACTCTCTTGGGACCCCACTTTTCACCGACAAAATGGT
TGAGATCTGGGAAGTGGAACGTAGACACGTCGCATGTATCCAAGATCCTG
TTTCCATTGACCTCTACACCAAAATTGGCACAACAAAGAAAGGTGACATC
CAACTTCCACTCTATCGATGTGCAAGAGGGACAGTTTCGCTTGAGTCTTT
TCACAGCCACATTGTCAATTTTATTCCAGGTACATCAGCAAACGGGGTGA
ACTTCCAAGCATATCTGTTAGCTGGATTGGCAAGATGGAACGAAGCTCGC
AAAGAAGATGTTCAAAATGCCGACCAAAACAACGCAATCAATTCAGTCTC
TTCCTTCCGTACGTTCGAGGCAGAGCTATGTGCCAAAGTTGACGCCCTCC
ACACACAGATTTTTGACAAACCGCTTGTCGGCAAGCCAAAACCATCAGCC
AAAATAAATGAGCTTTTCGGTGTGGAGTACTTGAAGCAAGAAAACTTTAA
GATGTCAACTGTGGAGAAAGAGGTTGACGACGGGATTGAGGACTCTGGGG
TTGAATCTGATGGGGGTTTGACCATGGGTATGTACAGCTGTCATGACAGT
GTTGACTTTGTATTTGTTGACAACGATAACCCTTTGAAGAACACCGGGAT
GGTCAAGGAAGTGTCTGATGAGGAGATTGAGGATGAAGATGACAGCCAGA
GCAGCCGAAGCCAGAGTCAGGATAGCCAGGAAGAAGTGTGCGATCATCGT
GGCATACCTGGTTGGGACAAAATCGACAAGCTGACTGATATGCTACTTGC
GCAGAAGGGAATCAGCATTCTGCCTTCGTCTGCAGCCAACATCGTCGCCT
CGTTCAATCAGCTTGATGAGTTTGACAAGAAAGCCATGGTCTGGCAACCA
GTGAAGATGAAGCCTGCTTCTGGCCGATTCCAACGAAAGAAGAGAATGTC
TGGTCATGCTGCTGCTCGAGAGATTGCAATGAGAAGATGTTTTCTCACCG
GTGGCAGTCCTGCCTTCCAACCCTCCAAAAATAGAATAGTGGAAGCTATT
TTTGTAAAGTTGTGCAGCAGACACCATACCGGCACTACCATCACAGATCA
TCCTGGGAAGAAAAAGGCCAAGTTTGCTTCCCGTCTTAAGCTCATCTTGG
AAGAATACAACAACTTACGTGCCCGAGTTTTCAACAGCAAATCCCTGAAA
GAACAGACCTCGATCACCCTCTTCAACGTTAACCAAACAACATTATCCAA
GTGGTTTAAAAACAAGGTGCGCGTTGAAGAAGTGACAGAGCTGATGAAAG
GACGACCGATACCATCCCACCTCAGTTTTACAACAACGAAGAAAAAGATG
GGATTGAACCAAATGGACTTGTCGCATGATGCTCCCCTGGTCACCTTTAC
TGATGCAGAAGACAAGATCGGCCAGGTGAAGAGGAAAAGAATTCAGCGAA
CAACGGACACAGACAAAATCAGTACCAGCCCTGTCCACTTCTTGCCAACT
GATGTTCTCCCGGATCCTCTATCACTGTCACCACCGCCGCCACCTGCTTC
AGCATCANGCGAACAACGGACACAGACAAAATCAGTACCAGCCCTGTCCA
CTTCTTGCCAACTGATGTTCTCCCGGATCCTCTATCACTGTCACCACCGC
CGCCACCTGCTTCAGCATCAACCCAACAACCACCAGAAGAAACCCAACCA
ATGCAAAAATCACCACAGCTTTCGCCACCCCCACCACCATCACTGATGCC
ATCCGCCACAACAACATCAACCCAGCAGCTACCTTTTGGTTGTGTGCAGT
TACCTCAACAAATGCTGATGCAGTTTCCACAGCCACCAACATTGATGCAA
CCCCCACCAAATCAACAATATTTCTATCTTCCCATCAAGCCAAATCCTGC
AGAACCTCATCCTTTCATGCCGCCAAAACCAGTGCCAAATTTCATCATAC
ATCCATCTGGACAAGGACCACCACCAGCAGCACAAAAAGGTAAGCCGATT
GGTTTGCCAAAGTCCAC Coding sequence (CDS) from alignment at sc0004229:2788..5704 >TCONS_00043448 ID=TCONS_00043448|Name=TCONS_00043448|organism=Clytia hemisphaerica|type=CDS|length=2646bp|location=Sequence derived from alignment at sc0004229:2788..5704 (Clytia hemisphaerica)
CAAAAGACCATCGACGAGGTACACAGTGAAAGCTACTTGAGGAACGCTGC
CAAGTATCTACAGGACTGCAAGCGCTACAAGGAAAGAGATACAAAGTTTG
CTCCTTTGAACCTCAACTTTCAAGAACTGCCAGCTAGAAAATCTGTACCA
ACACCGAAATGGTTTCTTTCCACGTATGCTCATGACGTAATGTACCGTTC
CAACATCTTAAAAGGCTCCATCACCTCTGTCTTTGGAAAAGTTCTCAAGA
TCGATTCGACCAAGAAGATCCTTAAGAAGCTGGCTGGTTATGATAAGAAC
ACAGCTGATTGGTGCACAAATGTTGGTAATGAGTATGGCGGAGTCCTCCA
GTGTGTGCTGACCTCTTCAGAATCCATTGACAGTCTGAGACCGATGGCCA
ATGGAATCATGGGCCGTTATGCAACTGCCAACGCCCATCCCCCAAAAGTA
TTGTATACCGATCGGGATTGTTGCAATGCAAGTGGCAATTCTAAAATGCA
GGAGCTTTTCAGTGATATTGAAGATCTCTTGACTGGAGGTGACAGCAAAG
AAGACAAGGAAAGAGATGCAATGATTATGGAATGGCTGAAATTGTTGGTC
CGCCTCGCCATTTGGCACTTTATGCACAGGCTGGTATGTGGCGTACATTC
TGAATCTCATCCACTGTACCAAACCTTTATGTCTCTTCTGTCTGGGTGCA
TATTCAAATGGAATGAGGATGATTACAAGAAGTTGATGGAAGCTAAACGG
CAAGCCCTCAAGAAAGAAGGCAACAAAACACCATCTGATGCAACCGTCAA
GCAATACCTGACCAAAGCAGAGATGCAACGTCACGTGAGAAGAATGACAA
GGGGAGAGTACGAAACAGAGAGGCTGATAGACGACCTGATTCTGCATTTT
ACCGGTGCAACGGACTCTCTTGGGACCCCACTTTTCACCGACAAAATGGT
TGAGATCTGGGAAGTGGAACGTAGACACGTCGCATGTATCCAAGATCCTG
TTTCCATTGACCTCTACACCAAAATTGGCACAACAAAGAAAGGTGACATC
CAACTTCCACTCTATCGATGTGCAAGAGGGACAGTTTCGCTTGAGTCTTT
TCACAGCCACATTGTCAATTTTATTCCAGGTACATCAGCAAACGGGGTGA
ACTTCCAAGCATATCTGTTAGCTGGATTGGCAAGATGGAACGAAGCTCGC
AAAGAAGATGTTCAAAATGCCGACCAAAACAACGCAATCAATTCAGTCTC
TTCCTTCCGTACGTTCGAGGCAGAGCTATGTGCCAAAGTTGACGCCCTCC
ACACACAGATTTTTGACAAACCGCTTGTCGGCAAGCCAAAACCATCAGCC
AAAATAAATGAGCTTTTCGGTGTGGAGTACTTGAAGCAAGAAAACTTTAA
GATGTCAACTGTGGAGAAAGAGGTTGACGACGGGATTGAGGACTCTGGGG
TTGAATCTGATGGGGGTTTGACCATGGGTATGTACAGCTGTCATGACAGT
GTTGACTTTGTATTTGTTGACAACGATAACCCTTTGAAGAACACCGGGAT
GGTCAAGGAAGTGTCTGATGAGGAGATTGAGGATGAAGATGACAGCCAGA
GCAGCCGAAGCCAGAGTCAGGATAGCCAGGAAGAAGTGTGCGATCATCGT
GGCATACCTGGTTGGGACAAAATCGACAAGCTGACTGATATGCTACTTGC
GCAGAAGGGAATCAGCATTCTGCCTTCGTCTGCAGCCAACATCGTCGCCT
CGTTCAATCAGCTTGATGAGTTTGACAAGAAAGCCATGGTCTGGCAACCA
GTGAAGATGAAGCCTGCTTCTGGCCGATTCCAACGAAAGAAGAGAATGTC
TGGTCATGCTGCTGCTCGAGAGATTGCAATGAGAAGATGTTTTCTCACCG
GTGGCAGTCCTGCCTTCCAACCCTCCAAAAATAGAATAGTGGAAGCTATT
TTTGTAAAGTTGTGCAGCAGACACCATACCGGCACTACCATCACAGATCA
TCCTGGGAAGAAAAAGGCCAAGTTTGCTTCCCGTCTTAAGCTCATCTTGG
AAGAATACAACAACTTACGTGCCCGAGTTTTCAACAGCAAATCCCTGAAA
GAACAGACCTCGATCACCCTCTTCAACGTTAACCAAACAACATTATCCAA
GTGGTTTAAAAACAAGGTGCGCGTTGAAGAAGTGACAGAGCTGATGAAAG
GACGACCGATACCATCCCACCTCAGTTTTACAACAACGAAGAAAAAGATG
GGATTGAACCAAATGGACTTGTCGCATGATGCTCCCCTGGTCACCTTTAC
TGATGCAGAAGACAAGATCGGCCAGGTGAAGAGGAAAAGAATTCAGCGAA
CAACGGACACAGACAAAATCAGTACCAGCCCTGTCCACTTCTTGCCAACT
GATGTTCTCCCGGATCCTCTATCACTGTCACCACCGCCGCCACCTGCTTC
AGCATCANGCGAACAACGGACACAGACAAAATCAGTACCAGCCCTGTCCA
CTTCTTGCCAACTGATGTTCTCCCGGATCCTCTATCACTGTCACCACCGC
CGCCACCTGCTTCAGCATCAACCCAACAACCACCAGAAGAAACCCAACCA
ATGCAAAAATCACCACAGCTTTCGCCACCCCCACCACCATCACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043448-exon-sc0004229-1491911889:2788..5704 | TCONS_00043448-exon-sc0004229-1491911889:2788..5704 | Clytia hemisphaerica | exon |
| TCONS_00043448-exon-sc0004229-1510915933:2788..5704 | TCONS_00043448-exon-sc0004229-1510915933:2788..5704 | Clytia hemisphaerica | exon |
| TCONS_00043448-exon-sc0004229-1575043694:2788..5704 | TCONS_00043448-exon-sc0004229-1575043694:2788..5704 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004229 | supercontig | sc0004229:2788..5704 . |
Blast
The following BLAST results are available for this feature:
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