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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043442 ID=TCONS_00043442|Name=TCONS_00043442|organism=Clytia hemisphaerica|type=transcript|length=1584bp
GTTGCGTTTTTCTCATGATCGTAATTTCGTTGCATTTGTAAACaggcaga
gtatgtttttattgttacgtaatgacaaagaaaaaagagggagagcttaa
atacaattttgtgaatacacacttaaaactttctactcaatcgcatgttc
aaactcgatacttttattagggacaccctgtacatgaAGAAAATAACATG
AAACAAAGTCAATACGaacatgaatgaatgaatgaacaaCGAACTGAGCA
AGACCTAAACATCCActccaaagttttttttaataaggttCTTATGCTCT
GTTAAAAGTTGGATGGTGGTGGAATCCAACTGTTCGAATGAGAAGTCCTT
GTTTGCTCCGCTATTTCCCTTTCTTATGCAAACAGGGCTCAGGTGGTAAT
ATCTTGCGCTCGCCTTGTTTGATTTTCTCAGGAGCCCGGTGTTCTTATCT
CGCCAAGTTGCTATTTCCATGTGAGTAATAGCAATGTCATCAGGAGGGGG
GGAAACTTCTTTGGAACTCGGTCGAGCGATCGGAACTGGGCAGCCACCGC
AACTACGGACTTTAGGATGGTCCTTTAAATACACCAAACGATACGGCTTA
TGATCGGATGTAGTTTGCTTTACAACTTCCCCAACTGGTGTAGATGATTC
GACTTTTCGGTTATACCTTTTTCGGGTTGTCCCTGACTTTTTACCCGCAC
CAGAGCTGATATTAAATTTACTTATGTTGGTCAAATTTGCAGATGTGTTA
CTAGCTCTAAGAAAAGCCATAAACCGATCTAATTGGCCTGATACCTTTGC
GACTGCGTATGTATGGGAACAAACACCGCTTCCGTTGAATCCCACACAAC
CGGCGCGTAGGTCCCGGTCGTCACATGTGAATGATCcatcttttttttgt
ttgacaTAATGGGGGCGCGAACTATCGGTGTTTATTACGTGATATGTTCC
GCTTTCCGCAAACGGTACGACACCACCAGCTGCAATGATTCGTTCTGCTT
TTGCGATTATGTTTTTCGAATAGGTGCAATCGATTCCAGGGATACCTTCG
TCGGGTGTTTCATCTTGATCAGAAACGGTAGATTCATAGAAAGCTTTTTC
AACTGTGATTCTCTCATCATCAGGAAGATTGTAATAGGAGTCTCCTATCT
GGAATTTAGGAAACAGTTCGGATATTTTGAAATCTCCTTCTCCGTGAAAC
GCTGACCTGTTTTCTTCCAATTGGGTGTCATATACTTCCTGCATGAGGTT
GAGAAATTTTGGAAGCTCGTGTGCTTGATACTTTGTTTTCCGGCGAATTT
TAGCGTTAAGGGATTCACTCTGGTTTGTGGAGAAATCTTCAGAGATGCCA
TTGCGTTGTCGGATGTTAGTCAACATGTGCGACCTCATATAAGGCACAAC
ATTTTTGGTGAACCACTCGTGAAACTTGGGTGATAGATTTTTTGGAACAT
GAGGCAACTCAATATCGTCCCATTTATTCTTGATGGATTCAACATAGATG
TCAAACATGTTGGCGTCTGGTGCATCTGCCAAACCCTCAATCCTGGGaag
taaaaaggaaaaaaaacgtCGATTAggaattaaa Run BLAST on NCBI protein sequence of TCONS_00043442-protein >TCONS_00043442-protein ID=TCONS_00043442-protein|Name=TCONS_00043442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
LIPNRRFFSFLLPRIEGLADAPDANMFDIYVESIKNKWDDIELPHVPKNL
SPKFHEWFTKNVVPYMRSHMLTNIRQRNGISEDFSTNQSESLNAKIRRKT
KYQAHELPKFLNLMQEVYDTQLEENRSAFHGEGDFKISELFPKFQIGDSY
YNLPDDERITVEKAFYESTVSDQDETPDEGIPGIDCTYSKNIIAKAERII
AAGGVVPFAESGTYHVINTDSSRPHYVKQKKDGSFTCDDRDLRAGCVGFN
GSGVCSHTYAVAKVSGQLDRFMAFLRASNTSANLTNISKFNISSGAGKKS
GTTRKRYNRKVESSTPVGEVVKQTTSDHKPYRLVYLKDHPKVRSCGGCPV
PIARPSSKEVSPPPDDIAITHMEIATWRDKNTGLLRKSNKASARYYHLSP
VCIRKGNSGANKDFSFEQLDSTTIQLLTEHKNLIKKNFGVDV Run BLAST on NCBI transcript from alignment at sc0004225:576..2159 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043442 ID=TCONS_00043442|Name=TCONS_00043442|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at sc0004225:576..2159 (Clytia hemisphaerica)
tttaattccTAATCGacgttttttttcctttttacttCCCAGGATTGAGG
GTTTGGCAGATGCACCAGACGCCAACATGTTTGACATCTATGTTGAATCC
ATCAAGAATAAATGGGACGATATTGAGTTGCCTCATGTTCCAAAAAATCT
ATCACCCAAGTTTCACGAGTGGTTCACCAAAAATGTTGTGCCTTATATGA
GGTCGCACATGTTGACTAACATCCGACAACGCAATGGCATCTCTGAAGAT
TTCTCCACAAACCAGAGTGAATCCCTTAACGCTAAAATTCGCCGGAAAAC
AAAGTATCAAGCACACGAGCTTCCAAAATTTCTCAACCTCATGCAGGAAG
TATATGACACCCAATTGGAAGAAAACAGGTCAGCGTTTCACGGAGAAGGA
GATTTCAAAATATCCGAACTGTTTCCTAAATTCCAGATAGGAGACTCCTA
TTACAATCTTCCTGATGATGAGAGAATCACAGTTGAAAAAGCTTTCTATG
AATCTACCGTTTCTGATCAAGATGAAACACCCGACGAAGGTATCCCTGGA
ATCGATTGCACCTATTCGAAAAACATAATCGCAAAAGCAGAACGAATCAT
TGCAGCTGGTGGTGTCGTACCGTTTGCGGAAAGCGGAACATATCACGTAA
TAAACACCGATAGTTCGCGCCCCCATTAtgtcaaacaaaaaaaagatgGA
TCATTCACATGTGACGACCGGGACCTACGCGCCGGTTGTGTGGGATTCAA
CGGAAGCGGTGTTTGTTCCCATACATACGCAGTCGCAAAGGTATCAGGCC
AATTAGATCGGTTTATGGCTTTTCTTAGAGCTAGTAACACATCTGCAAAT
TTGACCAACATAAGTAAATTTAATATCAGCTCTGGTGCGGGTAAAAAGTC
AGGGACAACCCGAAAAAGGTATAACCGAAAAGTCGAATCATCTACACCAG
TTGGGGAAGTTGTAAAGCAAACTACATCCGATCATAAGCCGTATCGTTTG
GTGTATTTAAAGGACCATCCTAAAGTCCGTAGTTGCGGTGGCTGCCCAGT
TCCGATCGCTCGACCGAGTTCCAAAGAAGTTTCCCCCCCTCCTGATGACA
TTGCTATTACTCACATGGAAATAGCAACTTGGCGAGATAAGAACACCGGG
CTCCTGAGAAAATCAAACAAGGCGAGCGCAAGATATTACCACCTGAGCCC
TGTTTGCATAAGAAAGGGAAATAGCGGAGCAAACAAGGACTTCTCATTCG
AACAGTTGGATTCCACCACCATCCAACTTTTAACAGAGCATAAGaacctt
attaaaaaaaactttggagTGGATGTTTAGGTCTTGCTCAGTTCGttgtt
cattcattcattcatgttCGTATTGACTTTGTTTCATGTTATTTTCTtca
tgtacagggtgtccctaataaaagtatcgagtttgaacatgcgattgagt
agaaagttttaagtgtgtattcacaaaattgtatttaagctctccctctt
ttttctttgtcattacgtaacaataaaaacatactctgcctGTTTACAAA
TGCAACGAAATTACGATCATGAGAAAAACGCAAC Coding sequence (CDS) from alignment at sc0004225:576..2159 >TCONS_00043442 ID=TCONS_00043442|Name=TCONS_00043442|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at sc0004225:576..2159 (Clytia hemisphaerica)
ttaattccTAATCGacgttttttttcctttttacttCCCAGGATTGAGGG
TTTGGCAGATGCACCAGACGCCAACATGTTTGACATCTATGTTGAATCCA
TCAAGAATAAATGGGACGATATTGAGTTGCCTCATGTTCCAAAAAATCTA
TCACCCAAGTTTCACGAGTGGTTCACCAAAAATGTTGTGCCTTATATGAG
GTCGCACATGTTGACTAACATCCGACAACGCAATGGCATCTCTGAAGATT
TCTCCACAAACCAGAGTGAATCCCTTAACGCTAAAATTCGCCGGAAAACA
AAGTATCAAGCACACGAGCTTCCAAAATTTCTCAACCTCATGCAGGAAGT
ATATGACACCCAATTGGAAGAAAACAGGTCAGCGTTTCACGGAGAAGGAG
ATTTCAAAATATCCGAACTGTTTCCTAAATTCCAGATAGGAGACTCCTAT
TACAATCTTCCTGATGATGAGAGAATCACAGTTGAAAAAGCTTTCTATGA
ATCTACCGTTTCTGATCAAGATGAAACACCCGACGAAGGTATCCCTGGAA
TCGATTGCACCTATTCGAAAAACATAATCGCAAAAGCAGAACGAATCATT
GCAGCTGGTGGTGTCGTACCGTTTGCGGAAAGCGGAACATATCACGTAAT
AAACACCGATAGTTCGCGCCCCCATTAtgtcaaacaaaaaaaagatgGAT
CATTCACATGTGACGACCGGGACCTACGCGCCGGTTGTGTGGGATTCAAC
GGAAGCGGTGTTTGTTCCCATACATACGCAGTCGCAAAGGTATCAGGCCA
ATTAGATCGGTTTATGGCTTTTCTTAGAGCTAGTAACACATCTGCAAATT
TGACCAACATAAGTAAATTTAATATCAGCTCTGGTGCGGGTAAAAAGTCA
GGGACAACCCGAAAAAGGTATAACCGAAAAGTCGAATCATCTACACCAGT
TGGGGAAGTTGTAAAGCAAACTACATCCGATCATAAGCCGTATCGTTTGG
TGTATTTAAAGGACCATCCTAAAGTCCGTAGTTGCGGTGGCTGCCCAGTT
CCGATCGCTCGACCGAGTTCCAAAGAAGTTTCCCCCCCTCCTGATGACAT
TGCTATTACTCACATGGAAATAGCAACTTGGCGAGATAAGAACACCGGGC
TCCTGAGAAAATCAAACAAGGCGAGCGCAAGATATTACCACCTGAGCCCT
GTTTGCATAAGAAAGGGAAATAGCGGAGCAAACAAGGACTTCTCATTCGA
ACAGTTGGATTCCACCACCATCCAACTTTTAACAGAGCATAAGaacctta
ttaaaaaaaactttggagTGGATGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043442-exon-sc0004225-1491911889:576..2159 | TCONS_00043442-exon-sc0004225-1491911889:576..2159 | Clytia hemisphaerica | exon |
| TCONS_00043442-exon-sc0004225-1510915933:576..2159 | TCONS_00043442-exon-sc0004225-1510915933:576..2159 | Clytia hemisphaerica | exon |
| TCONS_00043442-exon-sc0004225-1575043694:576..2159 | TCONS_00043442-exon-sc0004225-1575043694:576..2159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004225 | supercontig | sc0004225:576..2159 . |
Blast
The following BLAST results are available for this feature:
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