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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043440 ID=TCONS_00043440|Name=TCONS_00043440|organism=Clytia hemisphaerica|type=transcript|length=955bp
CGCCTATTTTGCTTACCTAAGCTAGTTGGAGAGCTCAAGAATGCTCACAA
ACCTCATAGAAGTGTGGATAATATtgaacttcaaaacttttgccTATTTT
CCACCAATTTTGCTTACCTAACTTAGCAAGTTTAAAAACCTCATAGAAGT
GCGGCCAATGTAAAAATCATATAAATCTCAACCAGGATGTGGCATTGTTG
CTAgcactttttgacttttcaggGGGTAATAATGCGCACATCATCTTTTT
TCGCCTATATTGGCGACATAACTTAATTGAATAATGAAGAGCTCAAATAT
GTTTAAAATCCTGAACAGAAGTGAGGAAGGTTTGACCAATATAAAACTCG
TACTACAATTTCACGACACATTTATTTGCAGTTTTTGGCATCTCAGGGGG
CAAAATTTGGGGCATTCTCCGACCTCCATgttgtaccctgagtatcaacC
TCAGGACGACCaagtatagaaattttatcgcgcatgtgtcaatctaatca
ctatagagagaatcaaagatgaagagcaaatattgccgtattaatgtcta
gcagattgTATCAGTATGCATGCTTACTATTGCCGAAttcccccagaaac
ctccaagtttaattttttgaaatgtgtttctttcaaaagaaatcctcTAC
ATCattccaaatgtataacagtaattgcactaaactattaattatacttt
aatggaatcgaaataatgcgcagatctttatgttatcgttctctatcact
gactcttttttaaaAGCGTCGATGATATTTTTGAGATCATGGCTGCATTC
GAATGCGACCCGAAAGCTTGGCTATCAACCCAGAGGTGGGGGaaggtgcc
actctttctccctggactCCACTTACCCTTTATCTTTTTTCTCTAATACT
GAGCATTAAGCAGTGAGTATCAAGTACAAATGACCCGACCAGGGATTGAA
CCTAC Run BLAST on NCBI transcript from alignment at sc0004223:22..1497- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043440 ID=TCONS_00043440|Name=TCONS_00043440|organism=Clytia hemisphaerica|type=transcript|length=1476bp|location=Sequence derived from alignment at sc0004223:22..1497- (Clytia hemisphaerica)
CGCCTATTTTGCTTACCTAAGCTAGTTGGAGAGCTCAAGAATGCTCACAA
ACCTCATAGAAGTGTGGATAATATTGAACTTCAAAACTTTTGCCTATTTT
CCACCAATTTTGCTTACCTAACTTAGCAAGTTTAAAAACCTCATAGAAGT
GCGGCCAATGTAAAAATCATATAAATCTCAACCAGGATGTGGCATTGTTG
CTAGCACTTTTTGACTTTTCAGGGGGTAATAATGCGCACATCATCTTTTT
TCGCCTATATTGGCGACATAACTTAATTGAATAATGAAGAGCTCAAATAT
GTTTAAAATCCTGAACAGAAGTGAGGAAGGTTTGACCAATATAAAACTCG
TACTACAATTTCACGACACATTTATTTGCAGTTTTTGGCATCTCAGGGGG
CAAAATTTGGGGCATTCTCCGACCTCCATGTTGTACCCTGAGTATCAACC
TCAGGACGACCAAGTATAGAAATTTTATCGCGCATGTGTCAATCTAATCA
CTATAGAGAGAATCAAAGATGAAGAGCAAATATTGCCGTATTAATGTCTA
GCAGATTGTATCAGTATGCATGCTTACTATTGCCGAATTCCCCCAGAAAC
CTCCAAGTTTAATTTTTTGAAATGTGTTTCTTTCAAAAGAAATCCTCTAC
ATCATTCCAAATGTATAACAGTAATTGCACTAAACTATTAATTATACTTT
AATGGAATCGAAATAATGCGCAGATCTTTATGTTATCGTTCTCTATCACT
GACTCTTTTTTAAAAGCGTCGATGATATTTTTGAGATATGCTTTCCACGA
CATGAGTAAAAGTATCAACTTTAAACTTAATCTAAGATCTTAGATTTTCG
TCATGCTTACTTTTCACAGCGTTGAATGCGCGCTGAATAGAATTGATATT
CGCTGTCACAGGTCGGAATATAATTTCGACATGTGATTTTCACGGTAGTC
ATGTTCTGATTGAGGTGATGTTTTGGTGTCAGTATTCNATTTCGACATGT
GATTTTCACGGTAGTCATGTTCTGATTGAGGTGATGTTTTGGTGTCAGTA
TTCCCTCTACCGGTAAGTAGGTACCTCCAACATTGAACATATTATCTGTT
TTTTTTCTCACGTTCGCTAATTTCGTTGTCTGGTCATTTATTTTCAACAA
TTCTTTCTTAATGATATAAAGATCTAGGTTATTTTTAATGACCTACATGA
GTTCAATACAATGTTTGTCGAATTGAAAAAAAATGTGTCATCATGGTAAT
TACTCTTACAAGAATATGATTTATTTATTTGTTACTATATGCACTTGTAT
TAATAGACCATGGCTGCATTCGAATGCGACCCGAAAGCTTGGCTATCAAC
CCAGAGGTGGGGGAAGGTGCCACTCTTTCTCCCTGGACTCCACTTACCCT
TTATCTTTTTTCTCTAATACTGAGCATTAAGCAGTGAGTATCAAGTACAA
ATGACCCGACCAGGGATTGAACCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043440-exon-sc0004223-1575043694:711..1497 | TCONS_00043440-exon-sc0004223-1575043694:711..1497 | Clytia hemisphaerica | exon |
| TCONS_00043440-exon-sc0004223-1575043694:22..189 | TCONS_00043440-exon-sc0004223-1575043694:22..189 | Clytia hemisphaerica | exon |
| TCONS_00043440-exon-sc0004223-1510915933:711..1497 | TCONS_00043440-exon-sc0004223-1510915933:711..1497 | Clytia hemisphaerica | exon |
| TCONS_00043440-exon-sc0004223-1510915933:22..189 | TCONS_00043440-exon-sc0004223-1510915933:22..189 | Clytia hemisphaerica | exon |
| TCONS_00043440-exon-sc0004223-1491911889:711..1497 | TCONS_00043440-exon-sc0004223-1491911889:711..1497 | Clytia hemisphaerica | exon |
| TCONS_00043440-exon-sc0004223-1491911889:22..189 | TCONS_00043440-exon-sc0004223-1491911889:22..189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004223 | supercontig | sc0004223:22..1497 - |
Blast
The following BLAST results are available for this feature:
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