TCONS_00043439 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043439
Unique Name	TCONS_00043439
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1498

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0004223:3..1500-

transcript sequence

>TCONS_00043439 ID=TCONS_00043439|Name=TCONS_00043439|organism=Clytia hemisphaerica|type=transcript|length=1498bp
TTTCGCCTATTTTGCTTACCTAAGCTAGTTGGAGAGCTCAAGAATGCTCA
CAAACCTCATAGAAGTGTGGATAATATtgaacttcaaaacttttgccTAT
TTTCCACCAATTTTGCTTACCTAACTTAGCAAGTTTAAAAACCTCATAGA
AGTGCGGCCAATGTAAAAATCATATAAATCTCAACCAGGATGTGGCATTG
TTGCTAgcactttttgacttttcaggGGGTAATAATGCGCACATCATCTT
TTTTCGCCTATATTGGCGACATAACTTAATTGAATAATGAAGAGCTCAAA
TATGTTTAAAATCCTGAACAGAAGTGAGGAAGGTTTGACCAATATAAAAC
TCGTACTACAATTTCACGACACATTTATTTGCAGTTTTTGGCATCTCAGG
GGGCAAAATTTGGGGCATTCTCCGACCTCCATgttgtaccctgagtatca
acCTCAGGACGACCaagtatagaaattttatcgcgcatgtgtcaatctaa
tcactatagagagaatcaaagatgaagagcaaatattgccgtattaatgt
ctagcagattgTATCAGTATGCATGCTTACTATTGCCGAAttcccccaga
aacctccaagtttaattttttgaaatgtgtttctttcaaaagaaatcctc
TACATCattccaaatgtataacagtaattgcactaaactattaattatac
tttaatggaatcgaaataatgcgcagatctttatgttatcgttctctatc
actgactcttttttaaaAGCGTCGATGATATTTTTGAGATATGCTTTCCA
CGACATGAGTAAAAGTATCAACTTTAAACTTAATCTAAGATCTTAGATTT
TCGTCATGCTTACTTTTCACAGCGTTGaatgcgcgctgaatagaattgaT
ATTCGCTGTCACAGGTCGGAATATAATTTCGACATGTGATTTTCACGGTA
GTCATGTTCTGATTGAGGTGATGTTTTGGTGTCAGTATTCNATTTCGACA
TGTGATTTTCACGGTAGTCATGTTCTGATTGAGGTGATGTTTTGGTGTCA
GTATTCCCTCTACCGGTAAGTAGGTACCTCCAACATTGAACATattatct
gttttttttctcacgTTCGCTAATTTCGTTGTCTGGTCATTTATTTTCAA
CAATTCTTTCTTAATGATATAAAGATCTAGGTTATTTTTAATGACCTACA
TGAGTTCAATACAATGTTTgtcgaattgaaaaaaaatgtgtcaTCATGGT
AATTACTCTTACAAGaatatgatttatttatttgttactATATGCACTTG
TATTAATAGACCATGGCTGCATTCGAATGCGACCCGAAAGCTTGGCTATC
AACCCAGAGGTGGGGGaaggtgccactctttctccctggactCCACTTAC
CCTTTATCTTTTTTCTCTAATACTGAGCATTAAGCAGTGAGTATCAAGTA
CAAATGACCCGACCAGGGATTGAACCTACGACCTCGCGCATCGTAGCC

Run BLAST on NCBI

transcript from alignment at sc0004223:3..1500-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043439 ID=TCONS_00043439|Name=TCONS_00043439|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at sc0004223:3..1500- (Clytia hemisphaerica)
TTTCGCCTATTTTGCTTACCTAAGCTAGTTGGAGAGCTCAAGAATGCTCA
CAAACCTCATAGAAGTGTGGATAATATTGAACTTCAAAACTTTTGCCTAT
TTTCCACCAATTTTGCTTACCTAACTTAGCAAGTTTAAAAACCTCATAGA
AGTGCGGCCAATGTAAAAATCATATAAATCTCAACCAGGATGTGGCATTG
TTGCTAGCACTTTTTGACTTTTCAGGGGGTAATAATGCGCACATCATCTT
TTTTCGCCTATATTGGCGACATAACTTAATTGAATAATGAAGAGCTCAAA
TATGTTTAAAATCCTGAACAGAAGTGAGGAAGGTTTGACCAATATAAAAC
TCGTACTACAATTTCACGACACATTTATTTGCAGTTTTTGGCATCTCAGG
GGGCAAAATTTGGGGCATTCTCCGACCTCCATGTTGTACCCTGAGTATCA
ACCTCAGGACGACCAAGTATAGAAATTTTATCGCGCATGTGTCAATCTAA
TCACTATAGAGAGAATCAAAGATGAAGAGCAAATATTGCCGTATTAATGT
CTAGCAGATTGTATCAGTATGCATGCTTACTATTGCCGAATTCCCCCAGA
AACCTCCAAGTTTAATTTTTTGAAATGTGTTTCTTTCAAAAGAAATCCTC
TACATCATTCCAAATGTATAACAGTAATTGCACTAAACTATTAATTATAC
TTTAATGGAATCGAAATAATGCGCAGATCTTTATGTTATCGTTCTCTATC
ACTGACTCTTTTTTAAAAGCGTCGATGATATTTTTGAGATATGCTTTCCA
CGACATGAGTAAAAGTATCAACTTTAAACTTAATCTAAGATCTTAGATTT
TCGTCATGCTTACTTTTCACAGCGTTGAATGCGCGCTGAATAGAATTGAT
ATTCGCTGTCACAGGTCGGAATATAATTTCGACATGTGATTTTCACGGTA
GTCATGTTCTGATTGAGGTGATGTTTTGGTGTCAGTATTCNATTTCGACA
TGTGATTTTCACGGTAGTCATGTTCTGATTGAGGTGATGTTTTGGTGTCA
GTATTCCCTCTACCGGTAAGTAGGTACCTCCAACATTGAACATATTATCT
GTTTTTTTTCTCACGTTCGCTAATTTCGTTGTCTGGTCATTTATTTTCAA
CAATTCTTTCTTAATGATATAAAGATCTAGGTTATTTTTAATGACCTACA
TGAGTTCAATACAATGTTTGTCGAATTGAAAAAAAATGTGTCATCATGGT
AATTACTCTTACAAGAATATGATTTATTTATTTGTTACTATATGCACTTG
TATTAATAGACCATGGCTGCATTCGAATGCGACCCGAAAGCTTGGCTATC
AACCCAGAGGTGGGGGAAGGTGCCACTCTTTCTCCCTGGACTCCACTTAC
CCTTTATCTTTTTTCTCTAATACTGAGCATTAAGCAGTGAGTATCAAGTA
CAAATGACCCGACCAGGGATTGAACCTACGACCTCGCGCATCGTAGCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_027136	XLOC_027136	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043439-exon-sc0004223-1575043694:3..1500	TCONS_00043439-exon-sc0004223-1575043694:3..1500	Clytia hemisphaerica	exon
TCONS_00043439-exon-sc0004223-1510915933:3..1500	TCONS_00043439-exon-sc0004223-1510915933:3..1500	Clytia hemisphaerica	exon
TCONS_00043439-exon-sc0004223-1491911889:3..1500	TCONS_00043439-exon-sc0004223-1491911889:3..1500	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0004223	supercontig	sc0004223:3..1500 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0653365	0.0737631	0.221932	0.422948	1.54678	1.00982	2.91998	2.74013	4.38816	2.92904	4.94823	5.39547	3.59654	3.4991	0.147096	0.0377319	0.165294	0.0502725	0.217117	0.166176	0	0.209628	0	0	5.01216	4.41997	0	0	0	0.0987919

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00043439 vs. Swiss-Prot (Human)

BLAST of TCONS_00043439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00043439 (transcript) - C. hemisphaerica