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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043427 ID=TCONS_00043427|Name=TCONS_00043427|organism=Clytia hemisphaerica|type=transcript|length=2262bp
GTTGTGGGTTCCTATTAAGATATTCCAAACGTTCAGAAGGAACAGGTTCT
GCTAAACACCAATCTTCATCCTGTGTAACACGTGAAAATGCCGTGTATGA
TGTTCCACAGTTCAATTGATCCATCCTAGTTTCAAGAGATGATTTAATTG
TAACATTTGGGACTTGTTGGTTGGGTCCGATAGTCATACCTTGAGATTTA
GCAATAATGATGGCCTAACCAGTAATCAATGGAAATCCAGTATGTTTACA
GCATTTTTTAACATCTTCACAATAAACAAAATTTGGTGTGATAGGAACCC
AAGTTGGGTGATTTTCATTCCGAACTGGAGCTTTATATCTTGGAAAGTCA
ATAATTACAATTTCTGGCATTTGTGGTGGTTTAGAATCGGGTTTATTACC
CGCTTTCATATACCGCGCCGCTTCCGCTCGCTCGTCTATTTGTGGGGACG
GGTCTACCatctttgttgttgtttttgtcagAGAGATCTAGTTTCAATCA
CCGATTCTGACCTTCTCCTAATTTTCTCTAGAACGAAAAAAATTGTAGGG
GAGGAATCGATGATTGAAACTAGTTTGTATGAGTTGGCAGTTTCAGACGT
TCAGATAGAAATTCACTGTCACTCACTCACTGGTGAACAGACAGTCAAAA
CAGTTCAAAAAAAGTATTATATATTCGATTTTATCATGCCACATTGGAAT
TGCAGCTCTTCACTGTGCTTCAACACTTTTTGTTCCAAACTGAAATGTTA
TCGATTACCAAGAAAACCTAATATTCAACTTAAATATAAGAGACTCTTCA
AAACAGAAGGATGGAATTGGAAAGCTGGTTATATTTGTTGTGAGCACTGG
GAAAATAATAAGAGAAACTCGTCTAGTGATTTGCCAACTGTGATTTTCCC
ACCAAGCCAATTGGTAAAGTTGAAAGAACTGATTCAAGATGCAAAAAATA
ATCACACAAAGAATCCATCAAGTAGTGACAAGATTGAATTGACTgtctta
aaaaacaaacttgttgcTGCAGAAAGAATTATATGTGAAGGCAAAGGAAG
TTTGAGCTCTAAACCTAAGAGACGTAttattacaaaaatatacaTGATTA
TTACATGACAGCATcagtaaaaacaagaaaaagtttaattacttGTGTGG
ATTATCCCTTGAACATTTTGATATGTTATTTGAATGTATCAAACCGTACC
TCTCAACGCTACCTCACACttcaattttgttcgacaagaaAACTCAGTAT
CTTGTGGTTTTAACGATTTGTCGTCACGCTCTTGACTATCGATTCATGGC
AAGTTTATTGAACACGTCAGAGGCTACCATTAGTCGCATTGGTAATGCTT
GTTGGCAACTATCNGCTACCATGAGTCGCATGGGTAATGCTTGGATTGTT
TTTCTGGCAACTATTTTTAACCAGGTTGATATCACACCAAGCCATGGGTA
CTTAGTTGAAAAGATGCCACAAACTTTCATTGAGACAGGTCATGGTCTGA
CTGATGTAGTTCTCGATGCTACAGAATTTAAATTTCACACAACAACTAAC
TACGATGTTAATTCGCTCATgttttcaaattacaaaaaccATTCCACAGG
TAAAGCCTTAATTGGCATAACACCACATGGAATGGGTCTTTTATTCAGTG
ATGTGTATCCTGGATCAATTAGTGATACAGAAATAACCGTGAAAACTAat
gttattgattttctttttgaggGACACGAATTAATGACTGACAGGGGTTT
TTCTGTCCAGGATTATTTTGCTGAGAATTACTTTGAATCGCCCCAAACAA
AAGGACAATCCTTTAATACAAAACTTTAATATTGCATGCACAAGAATCCA
CGTTGAGCGATTTATTGGAAGGGTACGAGACAGGAGAATTTTGAATGCAG
TGCGGCCCTTGAATCGTTGCGACTTATTGACTTGTGTATGGCAATTGTTG
TGTCACACTGTAAATTTAACTTGTCCACCTATTGGGTCCAAAGAATGATT
TGATAAATTTAATTTGAGCAAACTTTGAAGTAATATTTGAtactcaaaaa
tctaaaatctttacatttttaaaatattagaAACCATATATACATTATAA
TACATCTAGTAAAATTTTAGATAATCATCATATAAATTTCATCGTAGAAT
TCTACAATCTTgatattttttaccaaatttttgaTATATACTCGAAGAGT
GTCTAGATCTCCATATTCAAGTCAAACTTTCACCGATGTCTTTCAACTCA
TCTTCCTCAAAC Run BLAST on NCBI protein sequence of TCONS_00043427-protein >TCONS_00043427-protein ID=TCONS_00043427-protein|Name=TCONS_00043427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MFTAFFNIFTINKIWCDRNPSWVIFIPNWSFISWKVNNYNFWHLWWFRIG
FITRFHIPRRFRSLVYLWGRVYHLCCCFCQRDLVSITDSDLLLIFSRTKK
IVGEESMIETSLYELAVSDVQIEIHCHSLTGEQTVKTVQKKYYIFDFIMP
HWNCSSSLCFNTFCSKLKCYRLPRKPNIQLKYKRLFKTEGWNWKAGYICC
EHWENNKRNSSSDLPTVIFPPSQLVKLKELIQDAKNNHTKNPSSSDKIEL
TVLKNKLVAAERIICEGKGSLSSKPKRRIITKIYMIIT Run BLAST on NCBI transcript from alignment at sc0004213:1806..4067 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043427 ID=TCONS_00043427|Name=TCONS_00043427|organism=Clytia hemisphaerica|type=transcript|length=2262bp|location=Sequence derived from alignment at sc0004213:1806..4067 (Clytia hemisphaerica)
GTTTGAGGAAGATGAGTTGAAAGACATCGGTGAAAGTTTGACTTGAATAT
GGAGATCTAGACACTCTTCGAGTATATAtcaaaaatttggtaaaaaatat
cAAGATTGTAGAATTCTACGATGAAATTTATATGATGATTATCTAAAATT
TTACTAGATGTATTATAATGTATATATGGTTtctaatattttaaaaatgt
aaagattttagatttttgagtaTCAAATATTACTTCAAAGTTTGCTCAAA
TTAAATTTATCAAATCATTCTTTGGACCCAATAGGTGGACAAGTTAAATT
TACAGTGTGACACAACAATTGCCATACACAAGTCAATAAGTCGCAACGAT
TCAAGGGCCGCACTGCATTCAAAATTCTCCTGTCTCGTACCCTTCCAATA
AATCGCTCAACGTGGATTCTTGTGCATGCAATATTAAAGTTTTGTATTAA
AGGATTGTCCTTTTGTTTGGGGCGATTCAAAGTAATTCTCAGCAAAATAA
TCCTGGACAGAAAAACCCCTGTCAGTCATTAATTCGTGTCcctcaaaaag
aaaatcaataacatTAGTTTTCACGGTTATTTCTGTATCACTAATTGATC
CAGGATACACATCACTGAATAAAAGACCCATTCCATGTGGTGTTATGCCA
ATTAAGGCTTTACCTGTGGAATggtttttgtaatttgaaaacATGAGCGA
ATTAACATCGTAGTTAGTTGTTGTGTGAAATTTAAATTCTGTAGCATCGA
GAACTACATCAGTCAGACCATGACCTGTCTCAATGAAAGTTTGTGGCATC
TTTTCAACTAAGTACCCATGGCTTGGTGTGATATCAACCTGGTTAAAAAT
AGTTGCCAGAAAAACAATCCAAGCATTACCCATGCGACTCATGGTAGCNG
ATAGTTGCCAACAAGCATTACCAATGCGACTAATGGTAGCCTCTGACGTG
TTCAATAAACTTGCCATGAATCGATAGTCAAGAGCGTGACGACAAATCGT
TAAAACCACAAGATACTGAGTTttcttgtcgaacaaaattgaaGTGTGAG
GTAGCGTTGAGAGGTACGGTTTGATACATTCAAATAACATATCAAAATGT
TCAAGGGATAATCCACACaagtaattaaactttttcttgtttttactgAT
GCTGTCATGTAATAATCAtgtatatttttgtaataaTACGTCTCTTAGGT
TTAGAGCTCAAACTTCCTTTGCCTTCACATATAATTCTTTCTGCAgcaac
aagtttgttttttaagacAGTCAATTCAATCTTGTCACTACTTGATGGAT
TCTTTGTGTGATTATTTTTTGCATCTTGAATCAGTTCTTTCAACTTTACC
AATTGGCTTGGTGGGAAAATCACAGTTGGCAAATCACTAGACGAGTTTCT
CTTATTATTTTCCCAGTGCTCACAACAAATATAACCAGCTTTCCAATTCC
ATCCTTCTGTTTTGAAGAGTCTCTTATATTTAAGTTGAATATTAGGTTTT
CTTGGTAATCGATAACATTTCAGTTTGGAACAAAAAGTGTTGAAGCACAG
TGAAGAGCTGCAATTCCAATGTGGCATGATAAAATCGAATATATAATACT
TTTTTTGAACTGTTTTGACTGTCTGTTCACCAGTGAGTGAGTGACAGTGA
ATTTCTATCTGAACGTCTGAAACTGCCAACTCATACAAACTAGTTTCAAT
CATCGATTCCTCCCCTACAATTTTTTTCGTTCTAGAGAAAATTAGGAGAA
GGTCAGAATCGGTGATTGAAACTAGATCTCTctgacaaaaacaacaacaa
agatGGTAGACCCGTCCCCACAAATAGACGAGCGAGCGGAAGCGGCGCGG
TATATGAAAGCGGGTAATAAACCCGATTCTAAACCACCACAAATGCCAGA
AATTGTAATTATTGACTTTCCAAGATATAAAGCTCCAGTTCGGAATGAAA
ATCACCCAACTTGGGTTCCTATCACACCAAATTTTGTTTATTGTGAAGAT
GTTAAAAAATGCTGTAAACATACTGGATTTCCATTGATTACTGGTTAGGC
CATCATTATTGCTAAATCTCAAGGTATGACTATCGGACCCAACCAACAAG
TCCCAAATGTTACAATTAAATCATCTCTTGAAACTAGGATGGATCAATTG
AACTGTGGAACATCATACACGGCATTTTCACGTGTTACACAGGATGAAGA
TTGGTGTTTAGCAGAACCTGTTCCTTCTGAACGTTTGGAATATCTTAATA
GGAACCCACAAC Coding sequence (CDS) from alignment at sc0004213:1806..4067 >TCONS_00043427 ID=TCONS_00043427|Name=TCONS_00043427|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at sc0004213:1806..4067 (Clytia hemisphaerica)
TCATGTAATAATCAtgtatatttttgtaataaTACGTCTCTTAGGTTTAG
AGCTCAAACTTCCTTTGCCTTCACATATAATTCTTTCTGCAgcaacaagt
ttgttttttaagacAGTCAATTCAATCTTGTCACTACTTGATGGATTCTT
TGTGTGATTATTTTTTGCATCTTGAATCAGTTCTTTCAACTTTACCAATT
GGCTTGGTGGGAAAATCACAGTTGGCAAATCACTAGACGAGTTTCTCTTA
TTATTTTCCCAGTGCTCACAACAAATATAACCAGCTTTCCAATTCCATCC
TTCTGTTTTGAAGAGTCTCTTATATTTAAGTTGAATATTAGGTTTTCTTG
GTAATCGATAACATTTCAGTTTGGAACAAAAAGTGTTGAAGCACAGTGAA
GAGCTGCAATTCCAATGTGGCATGATAAAATCGAATATATAATACTTTTT
TTGAACTGTTTTGACTGTCTGTTCACCAGTGAGTGAGTGACAGTGAATTT
CTATCTGAACGTCTGAAACTGCCAACTCATACAAACTAGTTTCAATCATC
GATTCCTCCCCTACAATTTTTTTCGTTCTAGAGAAAATTAGGAGAAGGTC
AGAATCGGTGATTGAAACTAGATCTCTctgacaaaaacaacaacaaagat
GGTAGACCCGTCCCCACAAATAGACGAGCGAGCGGAAGCGGCGCGGTATA
TGAAAGCGGGTAATAAACCCGATTCTAAACCACCACAAATGCCAGAAATT
GTAATTATTGACTTTCCAAGATATAAAGCTCCAGTTCGGAATGAAAATCA
CCCAACTTGGGTTCCTATCACACCAAATTTTGTTTATTGTGAAGATGTTA
AAAAATGCTGTAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043427-exon-sc0004213-1491911889:1806..4067 | TCONS_00043427-exon-sc0004213-1491911889:1806..4067 | Clytia hemisphaerica | exon |
| TCONS_00043427-exon-sc0004213-1510915933:1806..4067 | TCONS_00043427-exon-sc0004213-1510915933:1806..4067 | Clytia hemisphaerica | exon |
| TCONS_00043427-exon-sc0004213-1575043694:1806..4067 | TCONS_00043427-exon-sc0004213-1575043694:1806..4067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0004213 | supercontig | sc0004213:1806..4067 . |
Blast
The following BLAST results are available for this feature:
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