TCONS_00043419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043419
Unique NameTCONS_00043419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043419 ID=TCONS_00043419|Name=TCONS_00043419|organism=Clytia hemisphaerica|type=transcript|length=632bp
NNTTCAAGTTTATACTAAGCCAAATGGAGGGCAAAAAGCTTATAAAGGAC
ATGTTCTAACTTTACCTCATGATGTTCAGCACATTGCTAATGTTTTGCCA
AGATGTCCCAGCGATATACCAGTTATCGTTTTTAAAATTGACGGTAAAGA
TAATAGATCAAGAGACCTAAGAGTGCGGagacaaaaagttcttgatgCAT
TAGTGTGGCTAACCGGAAAGAATAGTATGGGGGAACCAAACAACCCAAGG
TACCAAAATGTGATTATTGATAGAAGTAGATTTGATAAATTACCTGAAGA
TGATTATTTGCAAATGCCAATGAATGTAGACTTCAATCAAGAAGAGGTTG
AAGATGATGATTTAGATAATGAGGGAATTCTTCCTGATTTTGGTCCGAAT
TCTGAGGATAGCGAAGAAAAAGTTTATGATTGTAATACTGAAATGGGGAG
TTTTATTCCAATTAAAGTAAAaactaagaaagaaaaagatataattaatg
attcaattttgaATCCAGAATCTATTAAGATAGGCAATGAGCCTTTAAAT
GAGTTCACTACAGAGTATTTGGCTACTTTAGCTTTTCCAACACTTTTCCC
AGATGGTAAAGGAGATCCAACCAATTCAAGCN
Run BLAST on NCBI

protein sequence of TCONS_00043419-protein

>TCONS_00043419-protein ID=TCONS_00043419-protein|Name=TCONS_00043419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
XQVYTKPNGGQKAYKGHVLTLPHDVQHIANVLPRCPSDIPVIVFKIDGKD
NRSRDLRVRRQKVLDALVWLTGKNSMGEPNNPRYQNVIIDRSRFDKLPED
DYLQMPMNVDFNQEEVEDDDLDNEGILPDFGPNSEDSEEKVYDCNTEMGS
FIPIKVKTKKEKDIINDSILNPESIKIGNEPLNEFTTEYLATLAFPTLFP
DGKGDPTNSS
Run BLAST on NCBI

transcript from alignment at sc0004208:6026..6657

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043419 ID=TCONS_00043419|Name=TCONS_00043419|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0004208:6026..6657 (Clytia hemisphaerica)
NGCTTGAATTGGTTGGATCTCCTTTACCATCTGGGAAAAGTGTTGGAAAA
GCTAAAGTAGCCAAATACTCTGTAGTGAACTCATTTAAAGGCTCATTGCC
TATCTTAATAGATTCTGGATtcaaaattgaatcattaattatatcttttt
ctttcttagttTTTACTTTAATTGGAATAAAACTCCCCATTTCAGTATTA
CAATCATAAACTTTTTCTTCGCTATCCTCAGAATTCGGACCAAAATCAGG
AAGAATTCCCTCATTATCTAAATCATCATCTTCAACCTCTTCTTGATTGA
AGTCTACATTCATTGGCATTTGCAAATAATCATCTTCAGGTAATTTATCA
AATCTACTTCTATCAATAATCACATTTTGGTACCTTGGGTTGTTTGGTTC
CCCCATACTATTCTTTCCGGTTAGCCACACTAATGcatcaagaacttttt
gtctCCGCACTCTTAGGTCTCTTGATCTATTATCTTTACCGTCAATTTTA
AAAACGATAACTGGTATATCGCTGGGACATCTTGGCAAAACATTAGCAAT
GTGCTGAACATCATGAGGTAAAGTTAGAACATGTCCTTTATAAGCTTTTT
GCCCTCCATTTGGCTTAGTATAAACTTGAANN

Coding sequence (CDS) from alignment at sc0004208:6026..6657

>TCONS_00043419 ID=TCONS_00043419|Name=TCONS_00043419|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0004208:6026..6657 (Clytia hemisphaerica)
GCTTGAATTGGTTGGATCTCCTTTACCATCTGGGAAAAGTGTTGGAAAAG
CTAAAGTAGCCAAATACTCTGTAGTGAACTCATTTAAAGGCTCATTGCCT
ATCTTAATAGATTCTGGATtcaaaattgaatcattaattatatctttttc
tttcttagttTTTACTTTAATTGGAATAAAACTCCCCATTTCAGTATTAC
AATCATAAACTTTTTCTTCGCTATCCTCAGAATTCGGACCAAAATCAGGA
AGAATTCCCTCATTATCTAAATCATCATCTTCAACCTCTTCTTGATTGAA
GTCTACATTCATTGGCATTTGCAAATAATCATCTTCAGGTAATTTATCAA
ATCTACTTCTATCAATAATCACATTTTGGTACCTTGGGTTGTTTGGTTCC
CCCATACTATTCTTTCCGGTTAGCCACACTAATGcatcaagaactttttg
tctCCGCACTCTTAGGTCTCTTGATCTATTATCTTTACCGTCAATTTTAA
AAACGATAACTGGTATATCGCTGGGACATCTTGGCAAAACATTAGCAATG
TGCTGAACATCATGAGGTAAAGTTAGAACATGTCCTTTATAAGCTTTTTG
CCCTCCATTTGGCTTAGTATAAACTTGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027117XLOC_027117Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043419-proteinTCONS_00043419-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043419-exon-sc0004208-1491911889:6026..6657TCONS_00043419-exon-sc0004208-1491911889:6026..6657Clytia hemisphaericaexon
TCONS_00043419-exon-sc0004208-1510915933:6026..6657TCONS_00043419-exon-sc0004208-1510915933:6026..6657Clytia hemisphaericaexon
TCONS_00043419-exon-sc0004208-1575043694:6026..6657TCONS_00043419-exon-sc0004208-1575043694:6026..6657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004208supercontigsc0004208:6026..6657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24339	0.853537	0.358253	0.932446	2.39019	1.79861	2.08862	2.33884	1.39105	1.23572	1.72614	1.69455	1.5049	2.66076	0.358538	0.54677	1.04539	0.775941	1.11738	2.30952	1.58815	2.40213	0.170014	0.793335	1.43823	1.87792	1.37235	1.23979	0.363271	0.634404
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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