TCONS_00043409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043409
Unique NameTCONS_00043409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043409 ID=TCONS_00043409|Name=TCONS_00043409|organism=Clytia hemisphaerica|type=transcript|length=290bp
TTTTCATTATTCTACAGAGAAAGCAGCCATGCGTAAACAAATGGAAGACG
AAATCCGTGCGCAATTAGAAGCTAACGCAAGTGCAATGATGTCTTGGGAT
GATAAGCTTGAAGCCTCTCGCAAAGAAGTGGTCACAGAATCTGAAGAGGA
CACAAAAATTCCATTCTTCAGTAATATCAATGAAGATAATATGCTGACAG
GAAAAGTCAGATATAAACTCAAAGAAGGAATCATACGTATTGGTAAGAAA
GATGGAAGTCCTGACATTGCCATGAACGGTTTAGGGTGAG
Run BLAST on NCBI

transcript from alignment at sc0004201:487..1303-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043409 ID=TCONS_00043409|Name=TCONS_00043409|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at sc0004201:487..1303- (Clytia hemisphaerica)
TTTTCATTATTCTACAGAGAAAGCAGCCATGCGTAAACAAATGGAAGACG
AAATCCGTGCGCAATTAGAAGCTAACGCAAGTGCAATGATGTCTTGGGAT
GATAAGGTAAACTTCTCCTTTAAAGGTTTTAGTTTTATATCAAGCCGGTG
TCTCCTATTGTTATATTGTGTTCGATTTCGTGCTGAATAAATAAATTGAA
TGTAAAAAAGCTTGTAAATTAAAATTGATGAGTAAGCAAACGATGTCTTA
ACTCATTTTAAAAACAAAACCTTTAAATATTGGTCGTAAAAAGGGAACAG
CATTCCGCTATGGTGTGCAAGGTCCCAACGTGTGCACGAAGCCCGAATCT
AAAATCTAGCTCAACAATCTTTCAATTTCAGCTTGAAGCCTCTCGCAAAG
AAGTGGTCACAGAATCTGAAGAGGACACAAAAATTCCATTCTTCAGTAAT
ATCAATGAAGATAATATGCTGACAGGAAAAGTCAGATATAAACTCAAAGA
AGGTTCGTCTACGCCATATCTTAACCTTCGTTTCGAGCGTAAAGCTCCTC
CTCTTCAGGATATGAGCACTGCTCTTCGGATACATCGCATGCGCACTGAG
GTTTTAATGAAGCAATAGAGTTTCTAAACCTAAGCCAATCAGCTGTGTTT
TAAACATTCTTTTATTTGAAATCTCTATTGATAAACATCTTTTGTGAAAG
TTGTTTACTAAGTTTGAACCTAATAATATACATTATTTTCTTTTCGTCAT
TTAGGAATCATACGTATTGGTAAGAAAGATGGAAGTCCTGACATTGCCAT
GAACGGTTTAGGGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027109XLOC_027109Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043409-exon-sc0004201-1575043694:1198..1303TCONS_00043409-exon-sc0004201-1575043694:1198..1303Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1575043694:802..922TCONS_00043409-exon-sc0004201-1575043694:802..922Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1575043694:487..549TCONS_00043409-exon-sc0004201-1575043694:487..549Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1510915933:1198..1303TCONS_00043409-exon-sc0004201-1510915933:1198..1303Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1510915933:802..922TCONS_00043409-exon-sc0004201-1510915933:802..922Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1510915933:487..549TCONS_00043409-exon-sc0004201-1510915933:487..549Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1491911889:1198..1303TCONS_00043409-exon-sc0004201-1491911889:1198..1303Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1491911889:802..922TCONS_00043409-exon-sc0004201-1491911889:802..922Clytia hemisphaericaexon
TCONS_00043409-exon-sc0004201-1491911889:487..549TCONS_00043409-exon-sc0004201-1491911889:487..549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004201supercontigsc0004201:487..1303 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
102.514	94.8626	240.046	233.398	345.321	245.915	177.787	174.318	166.524	171.661	144.963	169.377	72.5307	69.298	20.5596	24.7218	32.4201	33.9009	153.028	179.543	44.7078	51.8428	43.515	45.0182	56.2033	50.1601	56.2268	72.1358	31.956	32.0648
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top