TCONS_00043400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043400
Unique NameTCONS_00043400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043400 ID=TCONS_00043400|Name=TCONS_00043400|organism=Clytia hemisphaerica|type=transcript|length=329bp
catttttgaTAGACTCGGTGAaatgaaaaaGAACAACCAACTGAAATTTG
AAGGTTCGATGAAGGATGAAATTCATGTCAAAATAGGTGGTGATCATGGT
GGTCCGACGTTCAAACAATGTTACCAGATTATCAACTGTGATTCGCCAAA
CAGCAAAAACAACACATGCATGTTCAGTACCTTTGACGGTAAAGACTATC
GTGTCAATCTTGAAACGTCACTTTCCCGTTTCACAAGTCAAGTGTGTATA
GTCCCGCATGTATATAGAGCCTTATATCTCCATCATAGTTTATATTTAGG
GTAGTGTGACACTGAAAAATATATCATTA
Run BLAST on NCBI

protein sequence of TCONS_00043400-protein

>TCONS_00043400-protein ID=TCONS_00043400-protein|Name=TCONS_00043400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
IFDRLGEMKKNNQLKFEGSMKDEIHVKIGGDHGGPTFKQCYQIINCDSPN
SKNNTCMFSTFDGKDYRVNLETSLSRFTSQVCIVPHVYRALYLHHSLYLG
Run BLAST on NCBI

transcript from alignment at sc0004192:17..627-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043400 ID=TCONS_00043400|Name=TCONS_00043400|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at sc0004192:17..627- (Clytia hemisphaerica)
CATTTTTGATAGACTCGGTGAAATGAAAAAGTAAATTTTGAATTTTTTCA
TCACCAATCGTGATCCCTTAGCTTGATTTTATGTAATATTTCTGTCTGGA
AAATTTATTCTGTAATATTTCTGCCCAATAAATTCATATAAAGTATATTT
TATANGATAGACTCGGTGAAATGAAAAAGTAAATTTTGAATTTTTTCATC
ACCAATCGTGATCCCTTAGCTTGATTTTATGTAATATTTCTGTCTGGAAA
ATTTATTCTGTAATATTTCTGCCCAATAAATTTATATAAAGTATATTTTA
TGATCTCTACAGGAACAACCAACTGAAATTTGAAGGTTCGATGAAGGATG
AAATTCATGTCAAAATAGGTGGTGATCATGGTGGTCCGACGTTCAAACAA
TGTTACCAGATTATCAACTGTGATTCGCCAAACAGCAAAAACAACACATG
CATGTTCAGTACCTTTGACGGTAAAGACTATCGTGTCAATCTTGAAACGT
CACTTTCCCGTTTCACAAGTCAAGTGTGTATAGTCCCGCATGTATATAGA
GCCTTATATCTCCATCATAGTTTATATTTAGGGTAGTGTGACACTGAAAA
ATATATCATTA

Coding sequence (CDS) from alignment at sc0004192:17..627-

>TCONS_00043400 ID=TCONS_00043400|Name=TCONS_00043400|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0004192:17..627- (Clytia hemisphaerica)
GAACAACCAACTGAAATTTGAAGGTTCGATGAAGGATGAAATTCATGTCA
AAATAGGTGGTGATCATGGTGGTCCGACGTTCAAACAATGTTACCAGATT
ATCAACTGTGATTCGCCAAACAGCAAAAACAACACATGCATGTTCAGTAC
CTTTGACGGTAAAGACTATCGTGTCAATCTTGAAACGTCACTTTCCCGTT
TCACAAGTCAAGTGTGTATAGTCCCGCATGTATATAGAGCCTTATATCTC
CATCATAGTTTATATTTAGGGTAGATTTTTGATAGACTCGGTGAAATGAA
AAAGAACAACCAACTGAAATTTGAAGGTTCGATGAAGGATGAAATTCATG
TCAAAATAGGTGGTGATCATGGTGGTCCGACGTTCAAACAATGTTACCAG
ATTATCAACTGTGATTCGCCAAACAGCAAAAACAACACATGCATGTTCAG
TACCTTTGACGGTAAAGACTATCGTGTCAATCTTGAAACGTCACTTTCCC
GTTTCACAAGTCAAGTGTGTATAGTCCCGCATGTATATAGAGCCTTATAT
CTCCATCATAGTTTATATTTAGGGTAGATTTTTGATAGACTCGGTGAAAT
GAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027100XLOC_027100Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043400-proteinTCONS_00043400-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043400-exon-sc0004192-1575043694:598..627TCONS_00043400-exon-sc0004192-1575043694:598..627Clytia hemisphaericaexon
TCONS_00043400-exon-sc0004192-1575043694:17..315TCONS_00043400-exon-sc0004192-1575043694:17..315Clytia hemisphaericaexon
TCONS_00043400-exon-sc0004192-1510915933:598..627TCONS_00043400-exon-sc0004192-1510915933:598..627Clytia hemisphaericaexon
TCONS_00043400-exon-sc0004192-1510915933:17..315TCONS_00043400-exon-sc0004192-1510915933:17..315Clytia hemisphaericaexon
TCONS_00043400-exon-sc0004192-1491911889:598..627TCONS_00043400-exon-sc0004192-1491911889:598..627Clytia hemisphaericaexon
TCONS_00043400-exon-sc0004192-1491911889:17..315TCONS_00043400-exon-sc0004192-1491911889:17..315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004192supercontigsc0004192:17..627 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.258643	0	0	0	1.44291	3.18851	3.70329	4.71182	1.2752	2.42873	4.4159	3.86245	3.92753	2.42385	1.02806	0.0674354	0	0.568564	0	0	0.500141	0	0.593109	0	4.20305	6.61849	0	0	0	0.334317
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009689DUF1280
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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