TCONS_00043369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043369
Unique NameTCONS_00043369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043369 ID=TCONS_00043369|Name=TCONS_00043369|organism=Clytia hemisphaerica|type=transcript|length=280bp
CTTTTTATGAAATGAAGGTGTTTACCATTTGATAATAATCGAAGCAGTCA
AATAAATGTATCATCAGTTTCCTCGGTTGTCTTgtctttttgtgtgtttt
tttggGCTTTTAGTCTTATTGACCAGTTGACTTCTTGATCTGTCTTTTCC
TGCTTGACATCCNgggtaacttgcatcagtggaggctaacatgcatagcc
ctcaaatgaaagacctggctggtcattaaaatacaaaattaaatcaaaac
aaaagtggtagagtagagctgcgagcggag
Run BLAST on NCBI

transcript from alignment at sc0004164:6565..6844

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043369 ID=TCONS_00043369|Name=TCONS_00043369|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0004164:6565..6844 (Clytia hemisphaerica)
ctccgctcgcagctctactctaccacttttgttttgatttaattttgtat
tttaatgaccagccaggtctttcatttgagggctatgcatgttagcctcc
actgatgcaagttacccNGGATGTCAAGCAGGAAAAGACAGATCAAGAAG
TCAACTGGTCAATAAGACTAAAAGCccaaaaaaacacacaaaaagacAAG
ACAACCGAGGAAACTGATGATACATTTATTTGACTGCTTCGATTATTATC
AAATGGTAAACACCTTCATTTCATAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027074XLOC_027074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043369-exon-sc0004164-1491911889:6565..6844TCONS_00043369-exon-sc0004164-1491911889:6565..6844Clytia hemisphaericaexon
TCONS_00043369-exon-sc0004164-1510915933:6565..6844TCONS_00043369-exon-sc0004164-1510915933:6565..6844Clytia hemisphaericaexon
TCONS_00043369-exon-sc0004164-1575043694:6565..6844TCONS_00043369-exon-sc0004164-1575043694:6565..6844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004164supercontigsc0004164:6565..6844 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.8275	14.0674	21.955	20.6364	53.096	38.9131	20.7714	23.7607	8.11419	6.44856	8.51512	13.8019	8.98515	15.7432	5.3619	3.96859	1.78033	6.55161	9.0036	5.92875	7.83387	21.4026	4.63062	6.32013	23.2785	17.7383	13.992	11.5233	6.96112	5.65189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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