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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043364 ID=TCONS_00043364|Name=TCONS_00043364|organism=Clytia hemisphaerica|type=transcript|length=922bp
NNCCTACAAAATGGTGCCTCAAATGGTGGTTGTATCCTCCGCCCTGCCCT
ACGTTCCTCCTCCCCTCTTTGGGGAGGAAGAACATTTGAGAGATAAGCAG
GTTCAAAGCcattgattattttataaaagtaaATTAGTCTTCGACTTAGT
CGCCTGTCCGACAGGCTTTCAagacctaactcaagataatttttttctct
ggaaGTTCCTCTGAAACATCCAGTTATTGCAAGACAAGCATCATATTGAA
CTGATTctagtttttcagaaaaagtgGAATTACCTGGACGATCATACACG
ACATCTCCATGATCTAAATGTGCCTTGAttggcttttttaattttttcat
caagatgACGGTCAAAAGCCACCTCATGATCAAGAatgagaccaagatgt
ttttgatgatcttGTCGAGCAATGGCTGCGTTGTTAAAATAAATTTCTGG
AAGATCAGTTAGATTTATCCTCCGAGTGAAGTACACTTCAACAGCCTGTT
TAGAAGGATCAGGGTTGAAGGTCattttccattgatgagcccactCACTA
ACCTTCTGCATGCCACTGTTCAATTCGTTTGAACAGCGAATATGATCAAG
GATAAGGAAGAATATTGACGAGTCATCAGCAAAAATTCAGGGAGGTCGTT
AATATATATCAGAAAGAAGAGCGGTCCTAGAATAGAGCCTTGAGGTACAC
CGGCCAAGACCTCCGTCCAATTGGAANGTCACTGTTCAATTCGTTTGAAC
AGCGAATATGATCAAGGATAAGGGAGAATATTGACGAgtcatcagcaaaa
attttgatcatggAAATATTTCCTTCAGGGAGGTCGTTAATATATATCAG
AAAGAAGAGCGGTCCTAGAATAGAGCCTTGAGGTACACCGGCTAAGACCT
CCGTCCAATTGGAAGCTTGGCc Run BLAST on NCBI protein sequence of TCONS_00043364-protein >TCONS_00043364-protein ID=TCONS_00043364-protein|Name=TCONS_00043364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MRWLLTVILMKKLKKPIKAHLDHGDVVYDRPGNSTFSEKLESVQYDACLA
ITGCFRGTSREKNYLELGLESLSDRRLSRRLIYFYKIINGFEPAYLSNVL
PPQRGEEERRAGRRIQPPFEAPFCR Run BLAST on NCBI transcript from alignment at sc0004158:2055..2976 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043364 ID=TCONS_00043364|Name=TCONS_00043364|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at sc0004158:2055..2976 (Clytia hemisphaerica)
gGCCAAGCTTCCAATTGGACGGAGGTCTTAGCCGGTGTACCTCAAGGCTC
TATTCTAGGACCGCTCTTCTTTCTGATATATATTAACGACCTCCCTGAAG
GAAATATTTccatgatcaaaatttttgctgatgacTCGTCAATATTCTCC
CTTATCCTTGATCATATTCGCTGTTCAAACGAATTGAACAGTGACNTTCC
AATTGGACGGAGGTCTTGGCCGGTGTACCTCAAGGCTCTATTCTAGGACC
GCTCTTCTTTCTGATATATATTAACGACCTCCCTGAATTTTTGCTGATGA
CTCGTCAATATTCTTCCTTATCCTTGATCATATTCGCTGTTCAAACGAAT
TGAACAGTGGCATGCAGAAGGTTAGTGagtgggctcatcaatggaaaatG
ACCTTCAACCCTGATCCTTCTAAACAGGCTGTTGAAGTGTACTTCACTCG
GAGGATAAATCTAACTGATCTTCCAGAAATTTATTTTAACAACGCAGCCA
TTGCTCGACaagatcatcaaaaacatcttggtctcatTCTTGATCATGAG
GTGGCTTTTGACCGTcatcttgatgaaaaaattaaaaaagccaaTCAAGG
CACATTTAGATCATGGAGATGTCGTGTATGATCGTCCAGGTAATTCcact
ttttctgaaaaactagAATCAGTTCAATATGATGCTTGTCTTGCAATAAC
TGGATGTTTCAGAGGAACttccagagaaaaaaattatcttgagttaggtc
tTGAAAGCCTGTCGGACAGGCGACTAAGTCGAAGACTAATttacttttat
aaaataatcaatgGCTTTGAACCTGCTTATCTCTCAAATGTTCTTCCTCC
CCAAAGAGGGGAGGAGGAACGTAGGGCAGGGCGGAGGATACAACCACCAT
TTGAGGCACCATTTTGTAGGNN Coding sequence (CDS) from alignment at sc0004158:2055..2976 >TCONS_00043364 ID=TCONS_00043364|Name=TCONS_00043364|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0004158:2055..2976 (Clytia hemisphaerica)
ATGAGGTGGCTTTTGACCGTcatcttgatgaaaaaattaaaaaagccaaT
CAAGGCACATTTAGATCATGGAGATGTCGTGTATGATCGTCCAGGTAATT
CcactttttctgaaaaactagAATCAGTTCAATATGATGCTTGTCTTGCA
ATAACTGGATGTTTCAGAGGAACttccagagaaaaaaattatcttgagtt
aggtctTGAAAGCCTGTCGGACAGGCGACTAAGTCGAAGACTAATttact
tttataaaataatcaatgGCTTTGAACCTGCTTATCTCTCAAATGTTCTT
CCTCCCCAAAGAGGGGAGGAGGAACGTAGGGCAGGGCGGAGGATACAACC
ACCATTTGAGGCACCATTTTGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043364-exon-sc0004158-1491911889:2055..2976 | TCONS_00043364-exon-sc0004158-1491911889:2055..2976 | Clytia hemisphaerica | exon |
| TCONS_00043364-exon-sc0004158-1510915933:2055..2976 | TCONS_00043364-exon-sc0004158-1510915933:2055..2976 | Clytia hemisphaerica | exon |
| TCONS_00043364-exon-sc0004158-1575043694:2055..2976 | TCONS_00043364-exon-sc0004158-1575043694:2055..2976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004158 | supercontig | sc0004158:2055..2976 . |
Blast
The following BLAST results are available for this feature:
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