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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043359 ID=TCONS_00043359|Name=TCONS_00043359|organism=Clytia hemisphaerica|type=transcript|length=1039bp
AGAAAATCGAACATGGTTTCTCTTGGATATGCATTCGTTGCCAGAAGAAC
CATCACAAACCCGACTTTGGAAACCATTTATGTTATCCATGTGAAGGACG
ACTTTCGATAGCCAACGGAAAAAGAACGGCGTGTGTGGATCCTTACACAA
ATGTTTTCGTCAGCTATCAGTCAAAAGAATTCTACATCATCGGAGTTATC
TCACTGGTTGGATCATTGACTGCCATACTAACTTTGGTAACCTTCATAAT
CAAAAGAAACACACCTATTGTTACGACTTCAGATTTCAAAGTTTCAACTT
TGCATATATCTATTCAGGCAGTTACAATGATCATCGTCCCCTTTTTATAC
TTTATGAATCATATTTGCATTTCGAAACCATTAGTTTTCACCACCTTATA
CACCCTCAACATTGGTATTGTTTTCATCAAGTCACACAAGCTTCTTCAAG
CATTTCTTTGCAAGGTAAAACTTACAGCCGAAGAAGCCAAACGCACAGTA
ATGACTCAGATTTTGACTGTTGTCATTTTTCTAGTCTCCGTAAACGCTGT
ATTCTTTGTTTGCCTTTATCAACAACAAGTAACCATTCTTGAATTCGAAG
ATCCTCAGGAAATGACAAGAGAGTATGTATGCAATACCTATTTTCACAGC
AATATTATAATGATCGCAATTGCAGTAATCCAACTAATGTGCACGATACA
AGCTTTTCGAGGACGACATCTTCCGAGTGTCATGAACGACGGTGTCGTTT
TGATGTTTACCACACTCATATTGACCGCTTCATTTGTTGTCTGCTTCATC
ATCGTTCCTTTTCAAAGGCCAATTGAGAAAGAAATTTCACAATGTATCGC
GATTTTGGTAAATACCATGGTCATCACATTCCTCATGTACGGACTAAAGG
CTTACCGTATTCTGTTTCATCCGGAACAAAACACAAGAGCGTATTTCCGA
AATCAGTGTTTGACAGAGATGAGACAAGACGTCAATCAAAGAATCGAGAT
GAGATAGCGAACATGTTAGTTATGAAACACTTAAGTATT Run BLAST on NCBI protein sequence of G protein coupled receptor >TCONS_00043359-protein ID=TCONS_00043359-protein|Name=G protein coupled receptor|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
KIEHGFSWICIRCQKNHHKPDFGNHLCYPCEGRLSIANGKRTACVDPYTN
VFVSYQSKEFYIIGVISLVGSLTAILTLVTFIIKRNTPIVTTSDFKVSTL
HISIQAVTMIIVPFLYFMNHICISKPLVFTTLYTLNIGIVFIKSHKLLQA
FLCKVKLTAEEAKRTVMTQILTVVIFLVSVNAVFFVCLYQQQVTILEFED
PQEMTREYVCNTYFHSNIIMIAIAVIQLMCTIQAFRGRHLPSVMNDGVVL
MFTTLILTASFVVCFIIVPFQRPIEKEISQCIAILVNTMVITFLMYGLKA
YRILFHPEQNTRAYFRNQCLTEMRQDVNQRIEMR Run BLAST on NCBI transcript from alignment at sc0004151:3..1041 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043359 ID=TCONS_00043359|Name=TCONS_00043359|organism=Clytia hemisphaerica|type=transcript|length=1039bp|location=Sequence derived from alignment at sc0004151:3..1041 (Clytia hemisphaerica)
AATACTTAAGTGTTTCATAACTAACATGTTCGCTATCTCATCTCGATTCT
TTGATTGACGTCTTGTCTCATCTCTGTCAAACACTGATTTCGGAAATACG
CTCTTGTGTTTTGTTCCGGATGAAACAGAATACGGTAAGCCTTTAGTCCG
TACATGAGGAATGTGATGACCATGGTATTTACCAAAATCGCGATACATTG
TGAAATTTCTTTCTCAATTGGCCTTTGAAAAGGAACGATGATGAAGCAGA
CAACAAATGAAGCGGTCAATATGAGTGTGGTAAACATCAAAACGACACCG
TCGTTCATGACACTCGGAAGATGTCGTCCTCGAAAAGCTTGTATCGTGCA
CATTAGTTGGATTACTGCAATTGCGATCATTATAATATTGCTGTGAAAAT
AGGTATTGCATACATACTCTCTTGTCATTTCCTGAGGATCTTCGAATTCA
AGAATGGTTACTTGTTGTTGATAAAGGCAAACAAAGAATACAGCGTTTAC
GGAGACTAGAAAAATGACAACAGTCAAAATCTGAGTCATTACTGTGCGTT
TGGCTTCTTCGGCTGTAAGTTTTACCTTGCAAAGAAATGCTTGAAGAAGC
TTGTGTGACTTGATGAAAACAATACCAATGTTGAGGGTGTATAAGGTGGT
GAAAACTAATGGTTTCGAAATGCAAATATGATTCATAAAGTATAAAAAGG
GGACGATGATCATTGTAACTGCCTGAATAGATATATGCAAAGTTGAAACT
TTGAAATCTGAAGTCGTAACAATAGGTGTGTTTCTTTTGATTATGAAGGT
TACCAAAGTTAGTATGGCAGTCAATGATCCAACCAGTGAGATAACTCCGA
TGATGTAGAATTCTTTTGACTGATAGCTGACGAAAACATTTGTGTAAGGA
TCCACACACGCCGTTCTTTTTCCGTTGGCTATCGAAAGTCGTCCTTCACA
TGGATAACATAAATGGTTTCCAAAGTCGGGTTTGTGATGGTTCTTCTGGC
AACGAATGCATATCCAAGAGAAACCATGTTCGATTTTCT Coding sequence (CDS) from alignment at sc0004151:3..1041 >TCONS_00043359 ID=TCONS_00043359|Name=TCONS_00043359|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0004151:3..1041 (Clytia hemisphaerica)
CTATCTCATCTCGATTCTTTGATTGACGTCTTGTCTCATCTCTGTCAAAC
ACTGATTTCGGAAATACGCTCTTGTGTTTTGTTCCGGATGAAACAGAATA
CGGTAAGCCTTTAGTCCGTACATGAGGAATGTGATGACCATGGTATTTAC
CAAAATCGCGATACATTGTGAAATTTCTTTCTCAATTGGCCTTTGAAAAG
GAACGATGATGAAGCAGACAACAAATGAAGCGGTCAATATGAGTGTGGTA
AACATCAAAACGACACCGTCGTTCATGACACTCGGAAGATGTCGTCCTCG
AAAAGCTTGTATCGTGCACATTAGTTGGATTACTGCAATTGCGATCATTA
TAATATTGCTGTGAAAATAGGTATTGCATACATACTCTCTTGTCATTTCC
TGAGGATCTTCGAATTCAAGAATGGTTACTTGTTGTTGATAAAGGCAAAC
AAAGAATACAGCGTTTACGGAGACTAGAAAAATGACAACAGTCAAAATCT
GAGTCATTACTGTGCGTTTGGCTTCTTCGGCTGTAAGTTTTACCTTGCAA
AGAAATGCTTGAAGAAGCTTGTGTGACTTGATGAAAACAATACCAATGTT
GAGGGTGTATAAGGTGGTGAAAACTAATGGTTTCGAAATGCAAATATGAT
TCATAAAGTATAAAAAGGGGACGATGATCATTGTAACTGCCTGAATAGAT
ATATGCAAAGTTGAAACTTTGAAATCTGAAGTCGTAACAATAGGTGTGTT
TCTTTTGATTATGAAGGTTACCAAAGTTAGTATGGCAGTCAATGATCCAA
CCAGTGAGATAACTCCGATGATGTAGAATTCTTTTGACTGATAGCTGACG
AAAACATTTGTGTAAGGATCCACACACGCCGTTCTTTTTCCGTTGGCTAT
CGAAAGTCGTCCTTCACATGGATAACATAAATGGTTTCCAAAGTCGGGTT
TGTGATGGTTCTTCTGGCAACGAATGCATATCCAAGAGAAACCATGTTCG
ATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043359-exon-sc0004151-1491911889:3..1041 | TCONS_00043359-exon-sc0004151-1491911889:3..1041 | Clytia hemisphaerica | exon |
| TCONS_00043359-exon-sc0004151-1510915933:3..1041 | TCONS_00043359-exon-sc0004151-1510915933:3..1041 | Clytia hemisphaerica | exon |
| TCONS_00043359-exon-sc0004151-1575043694:3..1041 | TCONS_00043359-exon-sc0004151-1575043694:3..1041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004151 | supercontig | sc0004151:3..1041 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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