TCONS_00043358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043358
Unique NameTCONS_00043358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043358 ID=TCONS_00043358|Name=TCONS_00043358|organism=Clytia hemisphaerica|type=transcript|length=626bp
CCCCAAATAGACGGGCAATTCTGTCCTGATACCGATCATCGCTCTTTGTA
CAcgtgtttgatttttttgaacagCGATTTTGAAGAAGGTGAAATAGAGT
TTTTCATTCCTAATGTTTATTTTAATTCGATTGAACGACGTAATAAGACT
AATAAACAGCTAATTGCAGCGTATGAGAGTGCAAATTGTCTTCAAACATT
TACTTATAAACCGAAAGCCGGAGATGTGCTTTTGATCCGACAAGATACAA
TTTATCATCACTTGAACCTCTCAAGAGGAACTGAAGATCAAAAGTGGTTC
TTGAAATGCGATTTAATGTTTGACCGAACTGGAGATGAAAAATTCCAATG
GTCAATTCCAGCAGAGGAAAAGATGTCGCACGATTCCTGTGTGTCGAGTT
TCCGTGGAAATCAATATGAagaatttacagaccagattcgATCGTGTCTG
GCTGCCGGTAANAGTTTCCGTGGAAATCAATATGAagaatttacagacca
gattcgATCGTGTCTGGCTGCCGGTAAGGAAGTTTCTGATGAATATGCGA
GTGATATTCCTGATGAAAGATATTTGTACGATCGTATGGAATCGATTCTA
AACACTAAATATACTTATCCTGTGAT
Run BLAST on NCBI

protein sequence of TCONS_00043358-protein

>TCONS_00043358-protein ID=TCONS_00043358-protein|Name=TCONS_00043358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
PQIDGQFCPDTDHRSLYTCLIFLNSDFEEGEIEFFIPNVYFNSIERRNKT
NKQLIAAYESANCLQTFTYKPKAGDVLLIRQDTIYHHLNLSRGTEDQKWF
LKCDLMFDRTGDEKFQWSIPAEEKMSHDSCVSSFRGNQYEEFTDQIRSCL
AAGXSFRGNQYEEFTDQIRSCLAAGKEVSDEYASDIPDERYLYDRMESIL
NTKYTYPV
Run BLAST on NCBI

transcript from alignment at sc0004149:1279..1904

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043358 ID=TCONS_00043358|Name=TCONS_00043358|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0004149:1279..1904 (Clytia hemisphaerica)
ATCACAGGATAAGTATATTTAGTGTTTAGAATCGATTCCATACGATCGTA
CAAATATCTTTCATCAGGAATATCACTCGCATATTCATCAGAAACTTCCT
TACCGGCAGCCAGACACGATcgaatctggtctgtaaattctTCATATTGA
TTTCCACGGAAACTNTTACCGGCAGCCAGACACGATcgaatctggtctgt
aaattctTCATATTGATTTCCACGGAAACTCGACACACAGGAATCGTGCG
ACATCTTTTCCTCTGCTGGAATTGACCATTGGAATTTTTCATCTCCAGTT
CGGTCAAACATTAAATCGCATTTCAAGAACCACTTTTGATCTTCAGTTCC
TCTTGAGAGGTTCAAGTGATGATAAATTGTATCTTGTCGGATCAAAAGCA
CATCTCCGGCTTTCGGTTTATAAGTAAATGTTTGAAGACAATTTGCACTC
TCATACGCTGCAATTAGCTGTTTATTAGTCTTATTACGTCGTTCAATCGA
ATTAAAATAAACATTAGGAATGAAAAACTCTATTTCACCTTCTTCAAAAT
CGctgttcaaaaaaatcaaacacgTGTACAAAGAGCGATGATCGGTATCA
GGACAGAATTGCCCGTCTATTTGGGG

Coding sequence (CDS) from alignment at sc0004149:1279..1904

>TCONS_00043358 ID=TCONS_00043358|Name=TCONS_00043358|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0004149:1279..1904 (Clytia hemisphaerica)
CACAGGATAAGTATATTTAGTGTTTAGAATCGATTCCATACGATCGTACA
AATATCTTTCATCAGGAATATCACTCGCATATTCATCAGAAACTTCCTTA
CCGGCAGCCAGACACGATcgaatctggtctgtaaattctTCATATTGATT
TCCACGGAAACTNTTACCGGCAGCCAGACACGATcgaatctggtctgtaa
attctTCATATTGATTTCCACGGAAACTCGACACACAGGAATCGTGCGAC
ATCTTTTCCTCTGCTGGAATTGACCATTGGAATTTTTCATCTCCAGTTCG
GTCAAACATTAAATCGCATTTCAAGAACCACTTTTGATCTTCAGTTCCTC
TTGAGAGGTTCAAGTGATGATAAATTGTATCTTGTCGGATCAAAAGCACA
TCTCCGGCTTTCGGTTTATAAGTAAATGTTTGAAGACAATTTGCACTCTC
ATACGCTGCAATTAGCTGTTTATTAGTCTTATTACGTCGTTCAATCGAAT
TAAAATAAACATTAGGAATGAAAAACTCTATTTCACCTTCTTCAAAATCG
ctgttcaaaaaaatcaaacacgTGTACAAAGAGCGATGATCGGTATCAGG
ACAGAATTGCCCGTCTATTTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027063XLOC_027063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043358-exon-sc0004149-1491911889:1279..1904TCONS_00043358-exon-sc0004149-1491911889:1279..1904Clytia hemisphaericaexon
TCONS_00043358-exon-sc0004149-1510915933:1279..1904TCONS_00043358-exon-sc0004149-1510915933:1279..1904Clytia hemisphaericaexon
TCONS_00043358-exon-sc0004149-1575043694:1279..1904TCONS_00043358-exon-sc0004149-1575043694:1279..1904Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043358-proteinTCONS_00043358-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004149supercontigsc0004149:1279..1904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.015097	0	0	0	0	0.205024	0	0.446314	0	0	0.287294	0.292546	0.381178	0.824799	0	0.229469	0.370795	0	0.294473	0.271891	0.545565	1.27685	0.25785	0	0	0	0.647692	0	0	0.129111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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