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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043356 ID=TCONS_00043356|Name=TCONS_00043356|organism=Clytia hemisphaerica|type=transcript|length=830bp
GAATCACggaatgacggataggaaaaattatcggggaaaaaaatgctCGT
CGCGCTCTGACTAATCAGCCAAATCTTCTCTGCTGACTCTCCACCATCTT
GATGTGGTCTAGCTCTATACTTTCTCAGTCACGCTCGATTTCCtcctttc
actttcgatttttcAATCTCCTCCAGAACAACATTGAGATCCCAAGTTCG
AACCCCACTGGAACACTTCCGATTTCAACTCACCTACTCGAAATAGCAGC
ACTCCAATGCACAATTCTGGTCTTCCACACACTCCATGTTCTGCTGTCCC
CTCGCCATCTTGGATTGCAGtcctttcactttcgatttctctttttcact
ttcgatttctttctttcactttcgatttctcgatTTCTTCTGGCACAACA
AGTTCGAACCCCACTATGATACTTCTGATTTCAATTTACTCTAAATAGTA
ATCCTTCAAAACTATATTCTGGTCTTTCACACAATCCATACTCTGTTAAT
CCTAAATCATCTTGACCTCTAGTTCAACATTTTTTCTGCCACCCCCTCCT
TTCACTTTCGTCTTCTCCCATTTTCACTTTCcctttcttgatttctttca
gCACAACACCAAGGTTCCAAGTTCAAACGGCACTAGAGCTCGGTTTAGAA
TACTCCCAATCCCAACTTACTCCAAAAAAACAATACTAACAACACCTTAC
CATCGCTTTCACTTCTACTTCCGTCCAGTTTCCCCACATGACCCACAGCT
TCCTGGAATTCGCTACGGGAAAATGCAACAATAGTAAAGCcgaagaagac
attgcagtatATTCGTTTCCTTGGTTTCTG Run BLAST on NCBI transcript from alignment at sc0004149:7849..10044- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043356 ID=TCONS_00043356|Name=TCONS_00043356|organism=Clytia hemisphaerica|type=transcript|length=2196bp|location=Sequence derived from alignment at sc0004149:7849..10044- (Clytia hemisphaerica)
GAATCACGGAATGACGGATAGGAAAAATTATCGGGGAAAAAAATGCTCGT
CGCGCTCTGACTAATCAGCCAAATCTTCTCTGCTGACTCTCCACCATCTT
GATGTGGTCTAGCTCTATACTTTCTCAGTCACGCTCGATTTCCTCCTTTC
ACTTTCGATTTTTCAATCTCCTCCAGAACAACATTGAGATCCCAAGGTTG
AGCCTTACTATAGCATTTTCGATCCTAACTTTTTGTCCCAATTCATACCT
TAGGAACCTTTTTACTATTTCATCATGCTGGACTTGATTCCTTCCTTTCC
TAGGTTCTATTTCTCTGTCACTTTCAGTTTTTGGACTTCTTTTAGTCAGC
TCTAAGGTCCCATGTTTATACAACCCTACCATAGTTACTTTCAACTTCAA
CTGATCTCAAACAGCAACATTTCACTGCACTACTATATCGTCCACACACC
CCGAACTCTGCTTAACTTGGTCTCTGCTACATTTCGCTAAATGCTCAGAG
CGTGTTATTATAATATGGGTTAAAGTACTCCTCTTTATAACCTGACTGAA
ATTCGAGCCGTTACTAGCAACCCTGCGGGGCCCAAGGCGCCGAGTATGCA
CCCGGCACAGTGACAAGCCGTTACTAGCAACCCTGACCCTACCTCCTTTT
ACCCCCTAAATCACGGAATGACGGATAGGAAAAATTATCGGAAAAAAATG
CTCGTCGCGCTCTGACTAATCAGCCAAATCTTCTCTGCTGACTCTCCAAC
ACCTTGATGTGGTCTAGCTCTATACTTTCTCAGTCACGCTCGATTTCCTC
CTTTCACTTTCGATTTTTCAATCTCCTCCAGAACAACATTGAGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTATTCATTTGACAATCGCCAAGTCAACGTAAGAGTATTTCTCTC
TACTATACTTTACTATTATTCCACCATTCATAAACTTCCTTTTTTTTATA
TAATAATACATTCAGGGGGCGTTCGGCATTTTTAGATATAATAAAATATT
TCCTTACCGGTAACTAAGGCCTGATGGTGCAGTGGATGGATAACTTTCAC
ACATCAGAATATGGGGGTCTNCACTACTATCCCAAGTTCGAACCCCACTG
GAACACTTCCGATTTCAACTCACCTACTCGAAATAGCAGCACTCCAATGC
ACAATTCTGGTCTCCCACACACTCCATGTNGATTTTTTCTATCACAACAC
TACTATCCCAAGTTCGAACCCCACTGGAACACTTCCGATTTCAACTCACC
TACTCGAAATAGCAGCACTCCAATGCACAATTCTGGTCTTCCACACACTC
CATGTTCTGCTGTCCCCTCGCCATCTTGGATTGCAGTCCTTTCACTTTCG
ATTTCTCTTTTTCACTTTCGATTTCTTTCTTTCACTTTCGATTTCTCGAT
TTCTTCTGGCACAACAAGTTCGAACCCCACTATGATACTTCTGATTTCAA
TTTACTCTAAATAGTAATCCTTCAAAACTATATTCTGGTCTTTCACACAA
TCCATACTCTGTTAATCCTAAATCATCTTGACCTCTAGTTCAACATTTTT
TCTGCCACCCCCTCCTTTCACTTTCGTCTTCTCCCATTTTCACTTTCCCT
TTCTTGATTTCTTTCAGCACAACACCAAGGTTCCAAGTTCAAACGGCACT
AGAGCTCGGTTTAGAATACTCCCAATCCCAACTTACTCCAAAAAAACAAT
ACTAACAACACCTTACCATCGCTTTCACTTCTACTTCCGTCCAGTTTCCC
CACATGACCCACAGCTTCCTGGAATTCGCTACGGGAAAATGCAACAATAG
TAAAGCCGAAGAAGACATTGCAGTATATTCGTTTCCTTGGTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043356-exon-sc0004149-1575043694:9849..10044 | TCONS_00043356-exon-sc0004149-1575043694:9849..10044 | Clytia hemisphaerica | exon |
| TCONS_00043356-exon-sc0004149-1575043694:7849..8482 | TCONS_00043356-exon-sc0004149-1575043694:7849..8482 | Clytia hemisphaerica | exon |
| TCONS_00043356-exon-sc0004149-1510915933:9849..10044 | TCONS_00043356-exon-sc0004149-1510915933:9849..10044 | Clytia hemisphaerica | exon |
| TCONS_00043356-exon-sc0004149-1510915933:7849..8482 | TCONS_00043356-exon-sc0004149-1510915933:7849..8482 | Clytia hemisphaerica | exon |
| TCONS_00043356-exon-sc0004149-1491911889:9849..10044 | TCONS_00043356-exon-sc0004149-1491911889:9849..10044 | Clytia hemisphaerica | exon |
| TCONS_00043356-exon-sc0004149-1491911889:7849..8482 | TCONS_00043356-exon-sc0004149-1491911889:7849..8482 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004149 | supercontig | sc0004149:7849..10044 - |
Blast
The following BLAST results are available for this feature:
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