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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043349 ID=TCONS_00043349|Name=TCONS_00043349|organism=Clytia hemisphaerica|type=transcript|length=866bp
GTTTTCTCTCCCTCCAAGCATGGGCGGGTTGAGAATACCAATCTTTTCTG
AAGAAGCCAAAAATGAATTCAGAGACTCGAGCGAGATGACCCGAAGTCTG
ACCAATAACATTGCCAACCAAGACTGAAAGAGCGTATAATCTGGATCAAA
atgaaaagcaaaaaataaagaGCAACATCAAGGCGTGTTGCAGAGAAAAC
TATCGAACAAAGGCAGATCACGTGTTCGAGAACATGAAAACTACTCAACA
ACATTTACACGAAACTAACTCGACGAAAGGAGCATCAATTTGGTTATCAA
CTCTTCCACTTAAAGAGGAGGGATTTCAACTGGACAAGGGCGTATTTTGG
GATCTCATAAAGATACGCTATGGGAAACCACTAAGCAGACTTCCCGAAAT
ATGTTCATGTAGTGCACGATTCGATCTTCAGCACGCCCTATCCTGCAAGA
AAGAAGGCTTTGTTACATTACGTCACAACATCCTAAGAAACATCACTGCT
GGTCTTCTAGCCGAGCAGATCTGTAAGGACGTACGAATCAATCCTCCCCT
TCAGACGATCACTGGTGAAGAGATGACGAAAGTTTCCATTAAGTCAGATG
AAGCAAGATTTGATGAGAGTGCTAGAGATTTCTGGATTCCATATATCAGA
AGGCATTTTTCGATATAAGGGTATTTAACCCATCATCCAGACGTTATGGA
AATATGAGAAACACGAGAAAAACgaaaaggagaagaagaaggcaCATAAT
GAACATGTTATTCAGATTGAGGATGGGAGCTTTACGTCCCTCGTGTTTTG
TTCAAATGGAGGGAAAGGACGCGACAGGGTTGCCACGGGtaggaaacttt
caaaattccagacttt Run BLAST on NCBI protein sequence of TCONS_00043349-protein >TCONS_00043349-protein ID=TCONS_00043349-protein|Name=TCONS_00043349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MKTTQQHLHETNSTKGASIWLSTLPLKEEGFQLDKGVFWDLIKIRYGKPL
SRLPEICSCSARFDLQHALSCKKEGFVTLRHNILRNITAGLLAEQICKDV
RINPPLQTITGEEMTKVSIKSDEARFDESARDFWIPYIRRHFSI Run BLAST on NCBI transcript from alignment at sc0004142:3038..3903 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043349 ID=TCONS_00043349|Name=TCONS_00043349|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0004142:3038..3903 (Clytia hemisphaerica)
aaagtctggaattttgaaagtttcctaCCCGTGGCAACCCTGTCGCGTCC
TTTCCCTCCATTTGAACAAAACACGAGGGACGTAAAGCTCCCATCCTCAA
TCTGAATAACATGTTCATTATGtgccttcttcttctccttttcGTTTTTC
TCGTGTTTCTCATATTTCCATAACGTCTGGATGATGGGTTAAATACCCTT
ATATCGAAAAATGCCTTCTGATATATGGAATCCAGAAATCTCTAGCACTC
TCATCAAATCTTGCTTCATCTGACTTAATGGAAACTTTCGTCATCTCTTC
ACCAGTGATCGTCTGAAGGGGAGGATTGATTCGTACGTCCTTACAGATCT
GCTCGGCTAGAAGACCAGCAGTGATGTTTCTTAGGATGTTGTGACGTAAT
GTAACAAAGCCTTCTTTCTTGCAGGATAGGGCGTGCTGAAGATCGAATCG
TGCACTACATGAACATATTTCGGGAAGTCTGCTTAGTGGTTTCCCATAGC
GTATCTTTATGAGATCCCAAAATACGCCCTTGTCCAGTTGAAATCCCTCC
TCTTTAAGTGGAAGAGTTGATAACCAAATTGATGCTCCTTTCGTCGAGTT
AGTTTCGTGTAAATGTTGTTGAGTAGTTTTCATGTTCTCGAACACGTGAT
CTGCCTTTGTTCGATAGTTTTCTCTGCAACACGCCTTGATGTTGCtcttt
attttttgcttttcatTTTGATCCAGATTATACGCTCTTTCAGTCTTGGT
TGGCAATGTTATTGGTCAGACTTCGGGTCATCTCGCTCGAGTCTCTGAAT
TCATTTTTGGCTTCTTCAGAAAAGATTGGTATTCTCAACCCGCCCATGCT
TGGAGGGAGAGAAAAC Coding sequence (CDS) from alignment at sc0004142:3038..3903 >TCONS_00043349 ID=TCONS_00043349|Name=TCONS_00043349|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0004142:3038..3903 (Clytia hemisphaerica)
TTATATCGAAAAATGCCTTCTGATATATGGAATCCAGAAATCTCTAGCAC
TCTCATCAAATCTTGCTTCATCTGACTTAATGGAAACTTTCGTCATCTCT
TCACCAGTGATCGTCTGAAGGGGAGGATTGATTCGTACGTCCTTACAGAT
CTGCTCGGCTAGAAGACCAGCAGTGATGTTTCTTAGGATGTTGTGACGTA
ATGTAACAAAGCCTTCTTTCTTGCAGGATAGGGCGTGCTGAAGATCGAAT
CGTGCACTACATGAACATATTTCGGGAAGTCTGCTTAGTGGTTTCCCATA
GCGTATCTTTATGAGATCCCAAAATACGCCCTTGTCCAGTTGAAATCCCT
CCTCTTTAAGTGGAAGAGTTGATAACCAAATTGATGCTCCTTTCGTCGAG
TTAGTTTCGTGTAAATGTTGTTGAGTAGTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043349-exon-sc0004142-1491911889:3038..3903 | TCONS_00043349-exon-sc0004142-1491911889:3038..3903 | Clytia hemisphaerica | exon |
| TCONS_00043349-exon-sc0004142-1510915933:3038..3903 | TCONS_00043349-exon-sc0004142-1510915933:3038..3903 | Clytia hemisphaerica | exon |
| TCONS_00043349-exon-sc0004142-1575043694:3038..3903 | TCONS_00043349-exon-sc0004142-1575043694:3038..3903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004142 | supercontig | sc0004142:3038..3903 . |
Blast
The following BLAST results are available for this feature:
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