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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043339 ID=TCONS_00043339|Name=TCONS_00043339|organism=Clytia hemisphaerica|type=transcript|length=892bp
CAGATTTCTTGGTAACTGGAAGGGTTTCATAGTAACGATGATGTCTGCTT
GGAATAAGTTGTTTTTTGCACAATGTAAGTAAGTCGTCTTTCTTCTTCTG
AGTTACTCCACATGGCTCGTGATACTTTTTCAGCAATTCATCTCGACATT
CATCACCCTTTCTCAATTCTCGGATGGGTTGCTTGAAAATGGCCTTGCGA
TATTTCTCGGTGTAGATGTACTTAAAGAAAACAGCATCTGGTTCTTCTTT
GCAGAATTTAATGGAGACAATCTCTGACCAGAAAATCTTGTCCACCTTGC
GTTTTGGCAAATCAATGTTGATGTTGTgttgcttttgttttgttttctga
tcTTTTGTCATGATTTCCTCCGTTTTATCTTGTAGCACAGATCTGAATTC
TGGAAAGgctctttcttttttaaaatcaataatGTCGCCATGCTCGAGCA
CAGTAAAAACACATCGGTTGGTTTTGAAGGCGCATTGGATTACAGCTTCC
CATTCGGCTGGGGTGTAAATGGTTTTCTTGGATACCATTCTTTCGATAAC
AGAATGGGCATTATCATTTTCGTTTTGAGAATGTCCCGACACTAGAAAGG
TGAGGGTAATCGAATCAATGTCATAGACACTCAAGGCATAGCTCAGCATT
ATGAAGACCATGCGGTTATCGTTTTGGCCACCGCAACGATCACAGAAAAA
CTCGAATTTCTTGATACCGGTTGAACTTTTCTCTGCAATGTATCGCAATA
GACTTGTAGAAACCTCGCATGACCCTTTTTGGCATTCTGCTNCACTCACT
TTTGTATGCCTTTTAAACGAGACCTTTTGCTTACGTCACAGAGGCTGTTA
AAAACTGTAGCTGTGTTTACTGAAGTGAATTATAAACCTTTT Run BLAST on NCBI protein sequence of TCONS_00043339-protein >TCONS_00043339-protein ID=TCONS_00043339-protein|Name=TCONS_00043339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MVFIMLSYALSVYDIDSITLTFLVSGHSQNENDNAHSVIERMVSKKTIYT
PAEWEAVIQCAFKTNRCVFTVLEHGDIIDFKKERAFPEFRSVLQDKTEEI
MTKDQKTKQKQHNINIDLPKRKVDKIFWSEIVSIKFCKEEPDAVFFKYIY
TEKYRKAIFKQPIRELRKGDECRDELLKKYHEPCGVTQKKKDDLLTLCKK
QLIPSRHHRYYETLPVTKKS Run BLAST on NCBI transcript from alignment at sc0004129:5346..6237 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043339 ID=TCONS_00043339|Name=TCONS_00043339|organism=Clytia hemisphaerica|type=transcript|length=892bp|location=Sequence derived from alignment at sc0004129:5346..6237 (Clytia hemisphaerica)
AAAAGGTTTATAATTCACTTCAGTAAACACAGCTACAGTTTTTAACAGCC
TCTGTGACGTAAGCAAAAGGTCTCGTTTAAAAGGCATACAAAAGTGAGTG
NAGCAGAATGCCAAAAAGGGTCATGCGAGGTTTCTACAAGTCTATTGCGA
TACATTGCAGAGAAAAGTTCAACCGGTATCAAGAAATTCGAGTTTTTCTG
TGATCGTTGCGGTGGCCAAAACGATAACCGCATGGTCTTCATAATGCTGA
GCTATGCCTTGAGTGTCTATGACATTGATTCGATTACCCTCACCTTTCTA
GTGTCGGGACATTCTCAAAACGAAAATGATAATGCCCATTCTGTTATCGA
AAGAATGGTATCCAAGAAAACCATTTACACCCCAGCCGAATGGGAAGCTG
TAATCCAATGCGCCTTCAAAACCAACCGATGTGTTTTTACTGTGCTCGAG
CATGGCGACattattgattttaaaaaagaaagagcCTTTCCAGAATTCAG
ATCTGTGCTACAAGATAAAACGGAGGAAATCATGACAAAAgatcagaaaa
caaaacaaaagcaacACAACATCAACATTGATTTGCCAAAACGCAAGGTG
GACAAGATTTTCTGGTCAGAGATTGTCTCCATTAAATTCTGCAAAGAAGA
ACCAGATGCTGTTTTCTTTAAGTACATCTACACCGAGAAATATCGCAAGG
CCATTTTCAAGCAACCCATCCGAGAATTGAGAAAGGGTGATGAATGTCGA
GATGAATTGCTGAAAAAGTATCACGAGCCATGTGGAGTAACTCAGAAGAA
GAAAGACGACTTACTTACATTGTGCAAAAAACAACTTATTCCAAGCAGAC
ATCATCGTTACTATGAAACCCTTCCAGTTACCAAGAAATCTG Coding sequence (CDS) from alignment at sc0004129:5346..6237 >TCONS_00043339 ID=TCONS_00043339|Name=TCONS_00043339|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0004129:5346..6237 (Clytia hemisphaerica)
ATGGTCTTCATAATGCTGAGCTATGCCTTGAGTGTCTATGACATTGATTC
GATTACCCTCACCTTTCTAGTGTCGGGACATTCTCAAAACGAAAATGATA
ATGCCCATTCTGTTATCGAAAGAATGGTATCCAAGAAAACCATTTACACC
CCAGCCGAATGGGAAGCTGTAATCCAATGCGCCTTCAAAACCAACCGATG
TGTTTTTACTGTGCTCGAGCATGGCGACattattgattttaaaaaagaaa
gagcCTTTCCAGAATTCAGATCTGTGCTACAAGATAAAACGGAGGAAATC
ATGACAAAAgatcagaaaacaaaacaaaagcaacACAACATCAACATTGA
TTTGCCAAAACGCAAGGTGGACAAGATTTTCTGGTCAGAGATTGTCTCCA
TTAAATTCTGCAAAGAAGAACCAGATGCTGTTTTCTTTAAGTACATCTAC
ACCGAGAAATATCGCAAGGCCATTTTCAAGCAACCCATCCGAGAATTGAG
AAAGGGTGATGAATGTCGAGATGAATTGCTGAAAAAGTATCACGAGCCAT
GTGGAGTAACTCAGAAGAAGAAAGACGACTTACTTACATTGTGCAAAAAA
CAACTTATTCCAAGCAGACATCATCGTTACTATGAAACCCTTCCAGTTAC
CAAGAAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043339-exon-sc0004129-1491911889:5346..6237 | TCONS_00043339-exon-sc0004129-1491911889:5346..6237 | Clytia hemisphaerica | exon |
| TCONS_00043339-exon-sc0004129-1510915933:5346..6237 | TCONS_00043339-exon-sc0004129-1510915933:5346..6237 | Clytia hemisphaerica | exon |
| TCONS_00043339-exon-sc0004129-1575043694:5346..6237 | TCONS_00043339-exon-sc0004129-1575043694:5346..6237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004129 | supercontig | sc0004129:5346..6237 . |
Blast
The following BLAST results are available for this feature:
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