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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043311 ID=TCONS_00043311|Name=TCONS_00043311|organism=Clytia hemisphaerica|type=transcript|length=1655bp
AAACCTGTTCTACTGTTCACCTTATCgttgattttattttgcagTTTCCT
CATGTGTTTCGACCAGTCATCTTGGTACTctttgaaatcttcaaaatcgT
CGTCATCGCTAGAATcagatcttttctttttcttattctttCTCAGTAac
gatttttctaattttcgttttcttttcaaatgttttctcGAAGAGTCTTC
AAGGATATTTTGAATGCGAACAAGCTGACGTTTCATTTGACCGATTTTCG
ATTCAGCTAGATAAGCTTTACCGCTACCTCGAGATGAAAATAGATCGTAT
CCCCGACGCCTCAGAAacatttttaaatctttgtttatgaACTCTGTGCC
CCTGTCTGTCTGCACTCTGGTGGTGGTCATGCATTTTCGTAGACAAGAGT
CTGCTTGTCTTCCTTTTCTACCACTTCTCAGAGTTCTCTTGGAAGGTTTA
CATGACAATTTCAATCCGAATTGTGAAAAAGCATTTTTGGTGGCGTTTAA
AACGTGTTCGGCAGACTTGCTTTTCACAGGCACCAACACAGAATAATTGG
AAAATCCATCCACTGCAACCAAAATGAATGGATATCTGTAACGTCTGTTA
TCTGGATTCAAACGACCCACGTCAGCCAAATCCATATGAATGAGAGCTAA
CGGACGATTGACACTTCCTGATTTTGTGAGAGTGTTGTAAACACGAGTTG
GTTTTCTATATACGGATTTTGTGTCACCGGTTTTTATTTTAAGACTAGTT
ATCCACTTGTCAACTTTTGATTTCAATTCTGAAGTGCTCACGTCTGACCA
TTTGGTGAGCACTCTGAAAAGAGCTGGGTCATACTGCTTCAGTTCTCGCC
TTCCTCGAATTGTGCTCACCAAGCGCTTGGCTTCTGTTTTGCTAGCATCA
AAAAGGGGATGTTCCAAATTTTTAGACTTGTAggctttttgaaatttctt
tttaaacattAATTCTGCACGGTCAGAATCATCGTTGCTGTCGACAACTT
TATAACGAgacttttttaacattttgtaaagatttatttcaaaataaaca
tgATGTGACAATACATACGTTTAGAAAATTACAAATGTTGAAATAATGTG
CACTTCAACTGCTAAAATATTAATGTTCATTTTCGTTGTTTCTTTCTCCT
GTGTTGCGACATTGATTTTGAGGTGGTAGAGGACACCACTGACAACTCTG
ACAAATAACCGTCGTCATCTTCCAAATTGTCTACCGTCCGTTTCTTTCCC
TTTGTAGCCCAATAAATCGAATCCTCGCCGGTCCTATTGAAATATGGTGA
ATTTTTAGGAAGAGGTTTGGTTACCAAAACCTCCGGTCTGCTCCTTTCCA
TCCGTTCTAGACGTTTTTCGATTGTGTTTTCTTCCTTATCCAACTGTTCT
TGTCGTTGGTCTTCTTTTGGTTTCTTTCGTGGAGGTGGTGCTATCCCTtg
ggtctttgtttttttctttctgatgCTCACGGTTTTcacttttctattgt
ttaaatctTTCTCTTGGTTGGTGAGTTCGATTTCTTTCCTGGCTCGCTTG
TCTACGTCTCTACCTATTTTTGTGGGTAAACTAACACGTTGTTTTAAGAA
CTCCACGTCATCACCAACGATGTTTGCTTGGTTCTTACCGACCATGGGAG
GTAGG Run BLAST on NCBI protein sequence of TCONS_00043311-protein >TCONS_00043311-protein ID=TCONS_00043311-protein|Name=TCONS_00043311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MLKKSRYKVVDSNDDSDRAELMFKKKFQKAYKSKNLEHPLFDASKTEAKR
LVSTIRGRRELKQYDPALFRVLTKWSDVSTSELKSKVDKWITSLKIKTGD
TKSVYRKPTRVYNTLTKSGSVNRPLALIHMDLADVGRLNPDNRRYRYPFI
LVAVDGFSNYSVLVPVKSKSAEHVLNATKNAFSQFGLKLSCKPSKRTLRS
GRKGRQADSCLRKCMTTTRVQTDRGTEFINKDLKMFLRRRGYDLFSSRGS
GKAYLAESKIGQMKRQLVRIQNILEDSSRKHLKRKRKLEKSLLRKNKKKK
RSDSSDDDDFEDFKEYQDDWSKHMRKLQNKINDKVNSRTG Run BLAST on NCBI transcript from alignment at sc0004115:5097..6751 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043311 ID=TCONS_00043311|Name=TCONS_00043311|organism=Clytia hemisphaerica|type=transcript|length=1655bp|location=Sequence derived from alignment at sc0004115:5097..6751 (Clytia hemisphaerica)
CCTACCTCCCATGGTCGGTAAGAACCAAGCAAACATCGTTGGTGATGACG
TGGAGTTCTTAAAACAACGTGTTAGTTTACCCACAAAAATAGGTAGAGAC
GTAGACAAGCGAGCCAGGAAAGAAATCGAACTCACCAACCAAGAGAAaga
tttaaacaatagaaaagtgAAAACCGTGAGcatcagaaagaaaaaaacaa
agacccaAGGGATAGCACCACCTCCACGAAAGAAACCAAAAGAAGACCAA
CGACAAGAACAGTTGGATAAGGAAGAAAACACAATCGAAAAACGTCTAGA
ACGGATGGAAAGGAGCAGACCGGAGGTTTTGGTAACCAAACCTCTTCCTA
AAAATTCACCATATTTCAATAGGACCGGCGAGGATTCGATTTATTGGGCT
ACAAAGGGAAAGAAACGGACGGTAGACAATTTGGAAGATGACGACGGTTA
TTTGTCAGAGTTGTCAGTGGTGTCCTCTACCACCTCAAAATCAATGTCGC
AACACAGGAGAAAGAAACAACGAAAATGAACATTAATATTTTAGCAGTTG
AAGTGCACATTATTTCAACATTTGTAATTTTCTAAACGTATGTATTGTCA
CATcatgtttattttgaaataaatctttacaaaatgttaaaaaagtcTCG
TTATAAAGTTGTCGACAGCAACGATGATTCTGACCGTGCAGAATTaatgt
ttaaaaagaaatttcaaaaagccTACAAGTCTAAAAATTTGGAACATCCC
CTTTTTGATGCTAGCAAAACAGAAGCCAAGCGCTTGGTGAGCACAATTCG
AGGAAGGCGAGAACTGAAGCAGTATGACCCAGCTCTTTTCAGAGTGCTCA
CCAAATGGTCAGACGTGAGCACTTCAGAATTGAAATCAAAAGTTGACAAG
TGGATAACTAGTCTTAAAATAAAAACCGGTGACACAAAATCCGTATATAG
AAAACCAACTCGTGTTTACAACACTCTCACAAAATCAGGAAGTGTCAATC
GTCCGTTAGCTCTCATTCATATGGATTTGGCTGACGTGGGTCGTTTGAAT
CCAGATAACAGACGTTACAGATATCCATTCATTTTGGTTGCAGTGGATGG
ATTTTCCAATTATTCTGTGTTGGTGCCTGTGAAAAGCAAGTCTGCCGAAC
ACGTTTTAAACGCCACCAAAAATGCTTTTTCACAATTCGGATTGAAATTG
TCATGTAAACCTTCCAAGAGAACTCTGAGAAGTGGTAGAAAAGGAAGACA
AGCAGACTCTTGTCTACGAAAATGCATGACCACCACCAGAGTGCAGACAG
ACAGGGGCACAGAGTtcataaacaaagatttaaaaatgtTTCTGAGGCGT
CGGGGATACGATCTATTTTCATCTCGAGGTAGCGGTAAAGCTTATCTAGC
TGAATCGAAAATCGGTCAAATGAAACGTCAGCTTGTTCGCATTCAAAATA
TCCTTGAAGACTCTTCgagaaaacatttgaaaagaaaacgaaaattagaa
aaatcgtTACTGAGaaagaataagaaaaagaaaagatctgATTCTAGCGA
TGACGAcgattttgaagatttcaaagAGTACCAAGATGACTGGTCGAAAC
ACATGAGGAAActgcaaaataaaatcaacGATAAGGTGAACAGTAGAACA
GGTTT Coding sequence (CDS) from alignment at sc0004115:5097..6751 >TCONS_00043311 ID=TCONS_00043311|Name=TCONS_00043311|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0004115:5097..6751 (Clytia hemisphaerica)
atgttaaaaaagtcTCGTTATAAAGTTGTCGACAGCAACGATGATTCTGA
CCGTGCAGAATTaatgtttaaaaagaaatttcaaaaagccTACAAGTCTA
AAAATTTGGAACATCCCCTTTTTGATGCTAGCAAAACAGAAGCCAAGCGC
TTGGTGAGCACAATTCGAGGAAGGCGAGAACTGAAGCAGTATGACCCAGC
TCTTTTCAGAGTGCTCACCAAATGGTCAGACGTGAGCACTTCAGAATTGA
AATCAAAAGTTGACAAGTGGATAACTAGTCTTAAAATAAAAACCGGTGAC
ACAAAATCCGTATATAGAAAACCAACTCGTGTTTACAACACTCTCACAAA
ATCAGGAAGTGTCAATCGTCCGTTAGCTCTCATTCATATGGATTTGGCTG
ACGTGGGTCGTTTGAATCCAGATAACAGACGTTACAGATATCCATTCATT
TTGGTTGCAGTGGATGGATTTTCCAATTATTCTGTGTTGGTGCCTGTGAA
AAGCAAGTCTGCCGAACACGTTTTAAACGCCACCAAAAATGCTTTTTCAC
AATTCGGATTGAAATTGTCATGTAAACCTTCCAAGAGAACTCTGAGAAGT
GGTAGAAAAGGAAGACAAGCAGACTCTTGTCTACGAAAATGCATGACCAC
CACCAGAGTGCAGACAGACAGGGGCACAGAGTtcataaacaaagatttaa
aaatgtTTCTGAGGCGTCGGGGATACGATCTATTTTCATCTCGAGGTAGC
GGTAAAGCTTATCTAGCTGAATCGAAAATCGGTCAAATGAAACGTCAGCT
TGTTCGCATTCAAAATATCCTTGAAGACTCTTCgagaaaacatttgaaaa
gaaaacgaaaattagaaaaatcgtTACTGAGaaagaataagaaaaagaaa
agatctgATTCTAGCGATGACGAcgattttgaagatttcaaagAGTACCA
AGATGACTGGTCGAAACACATGAGGAAActgcaaaataaaatcaacGATA
AGGTGAACAGTAGAACAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043311-exon-sc0004115-1491911889:5097..6751 | TCONS_00043311-exon-sc0004115-1491911889:5097..6751 | Clytia hemisphaerica | exon |
| TCONS_00043311-exon-sc0004115-1510915933:5097..6751 | TCONS_00043311-exon-sc0004115-1510915933:5097..6751 | Clytia hemisphaerica | exon |
| TCONS_00043311-exon-sc0004115-1575043694:5097..6751 | TCONS_00043311-exon-sc0004115-1575043694:5097..6751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004115 | supercontig | sc0004115:5097..6751 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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