|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043310 ID=TCONS_00043310|Name=TCONS_00043310|organism=Clytia hemisphaerica|type=transcript|length=1020bp
ACGTATTTTGCTTTCTGCATCGGCTGTTATTCTGGCTATCGTGTCATCTA
TTTTTACGCTGGTGTGGTCCAGTGACTTGCTAGCTGAAAATATGTCTTTG
ATGTTATCGGGGTGCGTGTCATCATTATCATTGATATTAGCGTGAACGGT
ATCGACGTGAAGTTCGCTTTGAATTCGATCCTCGACCTCTTCTTGATCGT
TGCCACTATTATAGGAAAGAAGAGTGAGTTCATCCTCGTAAAACCGATCA
TCTTTATCGGGCAAAAGTCTTATACGGTTTGAAAGTTCATCACTAATCAA
GGGTGTTGTTGCTTCGTTGATGTCAATCTCTTCTGTGACAGTATTCACAA
CGGTGTTGTCTTGCAAAACACTCGAAACGTTTCCACCAATAGCTGTTATA
ACTGTGGGTTCTGAAATAGTGAGAATGGTCGGTCTTCCCATATCAACACT
CACCAAGGATGTAGAATCTGGAGAGTCTGTCGTGAGTATGATTTCACCTG
GTGCAGCTAGATCTGGCTGAGCCAATGAGTTTGGTGCGTTGTAATCGACG
GTGCGCGCATCATTTGAAAGCAGAGACTGTGGTGGATTATAATCGACTGT
ACTGGTACCATCTAAGCCAACTTGGCTAGCACTGTCAGATGGTCTCACAG
AAAAGTTGTAAAGCAAAGTTTCTTGTTCACCCGTGTTGCTCAACACGCTC
TCTTGCAAACCTCCAAACGTTGAATCGGAAGCGTAAGCCACGTAAGATCT
GTTATCAGTTGAACTGTTTGATTGACCGTTTTCCATAGGCACTCCAACTT
GGCGAACGTTTATTGAGAATTCTTCTCTCATGATTTCCCTGATTGAATTC
ATAAGGTCAACGTTACTCATACCTTGGACTTGCGGATGAGATGCGTCTAC
ATCAATAGTGGTTTTGTCGCTATTCGGTTCTATTTTTACCTCTATCGGTT
GGGTTGCGTTGGCTTCGGCTATTCCCATAGTTTGAGAGCCTGCGTTTCTG
ATCGTTATTCCAACTTCTCG Run BLAST on NCBI protein sequence of TCONS_00043310-protein >TCONS_00043310-protein ID=TCONS_00043310-protein|Name=TCONS_00043310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
REVGITIRNAGSQTMGIAEANATQPIEVKIEPNSDKTTIDVDASHPQVQG
MSNVDLMNSIREIMREEFSINVRQVGVPMENGQSNSSTDNRSYVAYASDS
TFGGLQESVLSNTGEQETLLYNFSVRPSDSASQVGLDGTSTVDYNPPQSL
LSNDARTVDYNAPNSLAQPDLAAPGEIILTTDSPDSTSLVSVDMGRPTIL
TISEPTVITAIGGNVSSVLQDNTVVNTVTEEIDINEATTPLISDELSNRI
RLLPDKDDRFYEDELTLLSYNSGNDQEEVEDRIQSELHVDTVHANINDND
DTHPDNIKDIFSASKSLDHTSVKIDDTIARITADAESKIR Run BLAST on NCBI transcript from alignment at sc0004115:3958..4977 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043310 ID=TCONS_00043310|Name=TCONS_00043310|organism=Clytia hemisphaerica|type=transcript|length=1020bp|location=Sequence derived from alignment at sc0004115:3958..4977 (Clytia hemisphaerica)
CGAGAAGTTGGAATAACGATCAGAAACGCAGGCTCTCAAACTATGGGAAT
AGCCGAAGCCAACGCAACCCAACCGATAGAGGTAAAAATAGAACCGAATA
GCGACAAAACCACTATTGATGTAGACGCATCTCATCCGCAAGTCCAAGGT
ATGAGTAACGTTGACCTTATGAATTCAATCAGGGAAATCATGAGAGAAGA
ATTCTCAATAAACGTTCGCCAAGTTGGAGTGCCTATGGAAAACGGTCAAT
CAAACAGTTCAACTGATAACAGATCTTACGTGGCTTACGCTTCCGATTCA
ACGTTTGGAGGTTTGCAAGAGAGCGTGTTGAGCAACACGGGTGAACAAGA
AACTTTGCTTTACAACTTTTCTGTGAGACCATCTGACAGTGCTAGCCAAG
TTGGCTTAGATGGTACCAGTACAGTCGATTATAATCCACCACAGTCTCTG
CTTTCAAATGATGCGCGCACCGTCGATTACAACGCACCAAACTCATTGGC
TCAGCCAGATCTAGCTGCACCAGGTGAAATCATACTCACGACAGACTCTC
CAGATTCTACATCCTTGGTGAGTGTTGATATGGGAAGACCGACCATTCTC
ACTATTTCAGAACCCACAGTTATAACAGCTATTGGTGGAAACGTTTCGAG
TGTTTTGCAAGACAACACCGTTGTGAATACTGTCACAGAAGAGATTGACA
TCAACGAAGCAACAACACCCTTGATTAGTGATGAACTTTCAAACCGTATA
AGACTTTTGCCCGATAAAGATGATCGGTTTTACGAGGATGAACTCACTCT
TCTTTCCTATAATAGTGGCAACGATCAAGAAGAGGTCGAGGATCGAATTC
AAAGCGAACTTCACGTCGATACCGTTCACGCTAATATCAATGATAATGAT
GACACGCACCCCGATAACATCAAAGACATATTTTCAGCTAGCAAGTCACT
GGACCACACCAGCGTAAAAATAGATGACACGATAGCCAGAATAACAGCCG
ATGCAGAAAGCAAAATACGT Coding sequence (CDS) from alignment at sc0004115:3958..4977 >TCONS_00043310 ID=TCONS_00043310|Name=TCONS_00043310|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0004115:3958..4977 (Clytia hemisphaerica)
CGAGAAGTTGGAATAACGATCAGAAACGCAGGCTCTCAAACTATGGGAAT
AGCCGAAGCCAACGCAACCCAACCGATAGAGGTAAAAATAGAACCGAATA
GCGACAAAACCACTATTGATGTAGACGCATCTCATCCGCAAGTCCAAGGT
ATGAGTAACGTTGACCTTATGAATTCAATCAGGGAAATCATGAGAGAAGA
ATTCTCAATAAACGTTCGCCAAGTTGGAGTGCCTATGGAAAACGGTCAAT
CAAACAGTTCAACTGATAACAGATCTTACGTGGCTTACGCTTCCGATTCA
ACGTTTGGAGGTTTGCAAGAGAGCGTGTTGAGCAACACGGGTGAACAAGA
AACTTTGCTTTACAACTTTTCTGTGAGACCATCTGACAGTGCTAGCCAAG
TTGGCTTAGATGGTACCAGTACAGTCGATTATAATCCACCACAGTCTCTG
CTTTCAAATGATGCGCGCACCGTCGATTACAACGCACCAAACTCATTGGC
TCAGCCAGATCTAGCTGCACCAGGTGAAATCATACTCACGACAGACTCTC
CAGATTCTACATCCTTGGTGAGTGTTGATATGGGAAGACCGACCATTCTC
ACTATTTCAGAACCCACAGTTATAACAGCTATTGGTGGAAACGTTTCGAG
TGTTTTGCAAGACAACACCGTTGTGAATACTGTCACAGAAGAGATTGACA
TCAACGAAGCAACAACACCCTTGATTAGTGATGAACTTTCAAACCGTATA
AGACTTTTGCCCGATAAAGATGATCGGTTTTACGAGGATGAACTCACTCT
TCTTTCCTATAATAGTGGCAACGATCAAGAAGAGGTCGAGGATCGAATTC
AAAGCGAACTTCACGTCGATACCGTTCACGCTAATATCAATGATAATGAT
GACACGCACCCCGATAACATCAAAGACATATTTTCAGCTAGCAAGTCACT
GGACCACACCAGCGTAAAAATAGATGACACGATAGCCAGAATAACAGCCG
ATGCAGAAAGCAAAATACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043310-exon-sc0004115-1491911889:3958..4977 | TCONS_00043310-exon-sc0004115-1491911889:3958..4977 | Clytia hemisphaerica | exon |
| TCONS_00043310-exon-sc0004115-1510915933:3958..4977 | TCONS_00043310-exon-sc0004115-1510915933:3958..4977 | Clytia hemisphaerica | exon |
| TCONS_00043310-exon-sc0004115-1575043694:3958..4977 | TCONS_00043310-exon-sc0004115-1575043694:3958..4977 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004115 | supercontig | sc0004115:3958..4977 . |
Blast
The following BLAST results are available for this feature:
|
