TCONS_00043304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043304
Unique NameTCONS_00043304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043304 ID=TCONS_00043304|Name=TCONS_00043304|organism=Clytia hemisphaerica|type=transcript|length=389bp
AGATTTGGTGGTTCCTCTACAGAAGAAACAGATGACGGCTTATTAGCAGT
ATTGAAAGAATGCAAAAATGTCAACCTAGTTGACCAGAATGGAATGTCTG
CTGCACATCACGCATCGCTTAAGAAAAAGCCTTCTATCAGCAAGAAAATT
GCTATTTTCAAACGCCTCTTGAAAGCTGGTCTCGATGTGAACGCgcaaga
taaaaaaaatggtCGCACAGTGTTACACAATCTAGTAATGCTGGCATCAG
GTGATTATGAAACAACCAATGAACTTGAAATATTGCTGATATCTCACGGC
GCACTATTAGATGTTGAGTGTTCGCACGGCCGCTTCCCGATTCATTACGC
ATTCTTTGACAAATCAAACAGCAAGAAATTGGATTCGAC
Run BLAST on NCBI

protein sequence of TCONS_00043304-protein

>TCONS_00043304-protein ID=TCONS_00043304-protein|Name=TCONS_00043304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
RFGGSSTEETDDGLLAVLKECKNVNLVDQNGMSAAHHASLKKKPSISKKI
AIFKRLLKAGLDVNAQDKKNGRTVLHNLVMLASGDYETTNELEILLISHG
ALLDVECSHGRFPIHYAFFDKSNSKKLDS
Run BLAST on NCBI

transcript from alignment at sc0004110:3860..5624-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043304 ID=TCONS_00043304|Name=TCONS_00043304|organism=Clytia hemisphaerica|type=transcript|length=1765bp|location=Sequence derived from alignment at sc0004110:3860..5624- (Clytia hemisphaerica)
AGATTTGGTGGTTCCTCTACAGAAGAAACAGATGACGGCTTATTAGCAGT
ATTGAAAGAATGCAAAAATGTCAACCTAGTTGACCAGAATGGAATGTCTG
CTGCACATCACGCATCGCTTAAGAAAAAGCCTTGTAAGTTTTCCTATACA
TCGCTAAAAGCTTCCAGATTTATCAATTGAACTCTAGACATTTTCAAAAC
ACCAAAAAGTAAGCAATTTTAAAAGATACGTCACGCATCTGATCAAAGAT
GTAGTAAGGTTTCCCCTTCAACAGCATTAATATCATCAGGACAAAGTTCC
ATTCTCAGAAATTAAGTTTGATAATTTCATAAAAGTTAGAGGGTGCAAAA
AGCTTTATAATATGTTTTTCTATCAAAAGGTTGCACGATTGTTAGTGATT
GCCCGGTCTTTCTTGTTGGAACAACATTATATAAAAGGCATTTTAAGTTG
CGATTTCTGGTGGGTATGGTTCTTTCTCGAGAGCCAACGCAATTATCAAT
CCTCAAAGCGTCGAGACAAGCTTTATCAGGAAAGAATGACGTCAAAATCT
TTGTCCTTGAGAAAGTCATTGCAACAACTCCAGACATCTTGCTTGATGGA
TGTCATTGCAACCACAGATATCTTATATAAACACTAAATAGAGCTTTGTC
TTCCCTATCTGAAGCAAAATAACTCGCCATCTTGAATGAAGTTACGTCAT
AATTTAGCTTGTGAGCAAAATCTTAAAATATTTTTACCTAACTTTTCAAA
GTCTAGATATTTAAGTTACAAGTTTTGGTTTTTTAGGATGAAAACAATAG
AATTTCAACGTAAGAACAGTGTGTAAAGAACCCATTTTCAAAAATTTCAA
ATTTTGATATCTCGATTTTGGAAAATTGTCACGCAAAAATACTTTGAGGT
TTTACTAAGGACCAATCTAAATATTTCAAACCATCTGATTATCCTTTTAA
AGATTCCAGAATCTTTTATCAATTAGATCCTGAACATTTTTCAAATTGAA
GAAAGTCAATCTATAAACTAATCTTTATGTTTTCTTATAGCTATCAGCAA
GAAAATTGCTATTTTCAAACGCCTCTTGAAAGCTGGTCTCGATGTGAACG
CGCAAGATAAAAAAAATGGTCGCACAGTGTTACACAATCTAGTAATGCTG
GCATCAGGTGATTATGAAACAACCAATGAACTTGAAATATTGCTGATATC
TCACGGCGCACTATTAGATGTTGAGTGTTCGCACGGCCGCTTCCCGATTC
ATTACGCATTCTTTGACAAATCAAACAGGTAAGGGGATAATTTTTATATA
TAAACATACTTTTGCGTTTACGTACGTGTTTCACAAAGCCGTTTTTTCGT
CAAAGTAAACTTTCAATAAGGCTGGTGTCATTTGATGGTCCTTATCTACA
TTTAAACGCTAAGAATCGATAGAATGGAGAAAAGCGGGTAGAGGAAATTT
CGTTTCGAATAGTGCCCGACGTTTTTGACTTTTTGTCAGCTTGGTCAAAT
AATCAATGTATAAAGTTCTTCCGTCTCAGACGGATTTCCGTCTCCAGGGA
GATAAAAAAAGAGGCTTCTCTTTCTTCAAGCTCCACAAAATTATGCAAAG
TTTTAAAAATTATTGTTTAAAGTCCGATTTCCCGTTTGGAGCAAAAAAAT
TGACACCACCCTTGACCACTGAGCAATCAAAGCGATATGCGAAGTTTTGG
ATATTTTTCAAAGAAGTATTCTACTCGATTCTTGATTTTATTTTCAGCAA
GAAATTGGATTCGAC

Coding sequence (CDS) from alignment at sc0004110:3860..5624-

>TCONS_00043304 ID=TCONS_00043304|Name=TCONS_00043304|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0004110:3860..5624- (Clytia hemisphaerica)
CAAGAAATTGGATTCGCTATCAGCAAGAAAATTGCTATTTTCAAACGCCT
CTTGAAAGCTGGTCTCGATGTGAACGCGCAAGATAAAAAAAATGGTCGCA
CAGTGTTACACAATCTAGTAATGCTGGCATCAGGTGATTATGAAACAACC
AATGAACTTGAAATATTGCTGATATCTCACGGCGCACTATTAGATGTTGA
GTGTTCGCACGGCCGCTTCCCGATTCATTACGCATTCTTTGACAAATCAA
ACAGAGATTTGGTGGTTCCTCTACAGAAGAAACAGATGACGGCTTATTAG
CAGTATTGAAAGAATGCAAAAATGTCAACCTAGTTGACCAGAATGGAATG
TCTGCTGCACATCACGCATCGCTTAAGAAAAAGCCTTCAAGAAATTGGAT
TCGCTATCAGCAAGAAAATTGCTATTTTCAAACGCCTCTTGAAAGCTGGT
CTCGATGTGAACGCGCAAGATAAAAAAAATGGTCGCACAGTGTTACACAA
TCTAGTAATGCTGGCATCAGGTGATTATGAAACAACCAATGAACTTGAAA
TATTGCTGATATCTCACGGCGCACTATTAGATGTTGAGTGTTCGCACGGC
CGCTTCCCGATTCATTACGCATTCTTTGACAAATCAAACAGAGATTTGGT
GGTTCCTCTACAGAAGAAACAGATGACGGCTTATTAGCAGTATTGAAAGA
ATGCAAAAATGTCAACCTAGTTGACCAGAATGGAATGTCTGCTGCACATC
ACGCATCGCTTAAGAAAAAGCCTTCAAGAAATTGGATTCGCTATCAGCAA
GAAAATTGCTATTTTCAAACGCCTCTTGAAAGCTGGTCTCGATGTGAACG
CGCAAGATAAAAAAAATGGTCGCACAGTGTTACACAATCTAGTAATGCTG
GCATCAGGTGATTATGAAACAACCAATGAACTTGAAATATTGCTGATATC
TCACGGCGCACTATTAGATGTTGAGTGTTCGCACGGCCGCTTCCCGATTC
ATTACGCATTCTTTGACAAATCAAACAGAGATTTGGTGGTTCCTCTACAG
AAGAAACAGATGACGGCTTATTAGCAGTATTGAAAGAATGCAAAAATGTC
AACCTAGTTGACCAGAATGGAATGTCTGCTGCACATCACGCATCGCTTAA
GAAAAAGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027012XLOC_027012Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043304-proteinTCONS_00043304-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043304-exon-sc0004110-1575043694:5492..5624TCONS_00043304-exon-sc0004110-1575043694:5492..5624Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1575043694:4347..4584TCONS_00043304-exon-sc0004110-1575043694:4347..4584Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1575043694:3860..3877TCONS_00043304-exon-sc0004110-1575043694:3860..3877Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1510915933:5492..5624TCONS_00043304-exon-sc0004110-1510915933:5492..5624Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1510915933:4347..4584TCONS_00043304-exon-sc0004110-1510915933:4347..4584Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1510915933:3860..3877TCONS_00043304-exon-sc0004110-1510915933:3860..3877Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1491911889:5492..5624TCONS_00043304-exon-sc0004110-1491911889:5492..5624Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1491911889:4347..4584TCONS_00043304-exon-sc0004110-1491911889:4347..4584Clytia hemisphaericaexon
TCONS_00043304-exon-sc0004110-1491911889:3860..3877TCONS_00043304-exon-sc0004110-1491911889:3860..3877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004110supercontigsc0004110:3860..5624 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.878182	1.84743	1.82978	1.97063	0.20396	1.85768	1.8725	1.90608	1.26929	1.68264	0	0	0	0	0	0	0	0	0	0	4.14855	3.6383	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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