TCONS_00043302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043302
Unique NameTCONS_00043302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043302 ID=TCONS_00043302|Name=TCONS_00043302|organism=Clytia hemisphaerica|type=transcript|length=309bp
CATCGTTTGTACATGGATAGGGAATGGTCTAATGGTCATGGTATCCTGTT
TCTTAAATAGAGAACATTTTGTTATGGATTTGTACAGTGTTGTTCTTCAG
AAATTATTATGGAGCTTATCGCAACCAACCAtcttaacaaaataaacaaa
gaccaaAGACCGACCAATGGAAACATTACCTTTAGCCCTCTTGAAAATTG
AGAGTGGCATATTTTTGCTGCATGGTAATACATCCAAGAAATTTGGTAGT
CTTTGTAggtggcaatcacaaatatgttCGTTTCAACAaccgaccgacca
accgaccga
Run BLAST on NCBI

transcript from alignment at sc0004108:7345..7653

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043302 ID=TCONS_00043302|Name=TCONS_00043302|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at sc0004108:7345..7653 (Clytia hemisphaerica)
tcggtcggttggtcggtcggtTGTTGAAACGaacatatttgtgattgcca
ccTACAAAGACTACCAAATTTCTTGGATGTATTACCATGCAGCAAAAATA
TGCCACTCTCAATTTTCAAGAGGGCTAAAGGTAATGTTTCCATTGGTCGG
TCTttggtctttgtttattttgttaagaTGGTTGGTTGCGATAAGCTCCA
TAATAATTTCTGAAGAACAACACTGTACAAATCCATAACAAAATGTTCTC
TATTTAAGAAACAGGATACCATGACCATTAGACCATTCCCTATCCATGTA
CAAACGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027010XLOC_027010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043302-exon-sc0004108-1491911889:7345..7653TCONS_00043302-exon-sc0004108-1491911889:7345..7653Clytia hemisphaericaexon
TCONS_00043302-exon-sc0004108-1510915933:7345..7653TCONS_00043302-exon-sc0004108-1510915933:7345..7653Clytia hemisphaericaexon
TCONS_00043302-exon-sc0004108-1575043694:7345..7653TCONS_00043302-exon-sc0004108-1575043694:7345..7653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004108supercontigsc0004108:7345..7653 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48189	0	1.60035	5.14779	4.78485	2.39044	0.455899	0.52996	0	2.54487	0	0.728501	1.15518	3.30142	1.50571	1.78023	0	2.44419	0	3.08743	2.80551	1.88394	4.59656	1.95883	3.95582	1.35914	1.33436	0.947897	8.90724	5.82172
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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