TCONS_00043301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043301
Unique NameTCONS_00043301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043301 ID=TCONS_00043301|Name=TCONS_00043301|organism=Clytia hemisphaerica|type=transcript|length=698bp
CCGCAGTTTCGATACCGAGACTGATCACCGACTTTTAAAAGCCACAATGT
TTGCTCCCACCTCAAAGAAAAGTCGAAAGAGATTCTGCAACAATCCCAAA
CCTCCGAGACAACGTGTTGACCTCACTAAACTCAAAGATCATCAAGTCCG
TGAACGATACACCTCTAACCTAGACGCAAAACTACGAATGAATAGAGATG
ATTCAGCCGATACCTCCACTAGATCAACAAACTTAATTAACACGCTTTCT
TCAGCTGCATTCGAAACGCTTCCACTGAAACAAAAACGTGACGAATCCAA
AGAGGACTTCAAAGACGATGATTGCTTCAATAGACTTCTTGAAAACAGAA
TGGCTTTTTCGAAAGGTACTCAAGAATTCAAGAAAGCTACCATGAAGATA
AAGAATCGTGTGAAATACCTACGTAACGAAAAGCTAAGACGCGAAGCCGA
GACGGTAAACCAGCACGCAACTCGTAGAGAAGCTGAGGAACTGTTCAGAA
AGATTAAAAATGTTAGTTCTTCGTTCCAAAACGTTCGCAGGAAAAACAAA
TGTGACTCCGAAAAACTCAGAAACTATTTTTATGACCACTTCACCACGAA
GCTTAACGATTAGGCTGAAATTCCGAATGAACTCGATTCTGTCCCATCCT
TCATTGAAATGCTTCAGGACAATGAAGACGATATCAACCAAAATCCAC
Run BLAST on NCBI

protein sequence of TCONS_00043301-protein

>TCONS_00043301-protein ID=TCONS_00043301-protein|Name=TCONS_00043301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
RSFDTETDHRLLKATMFAPTSKKSRKRFCNNPKPPRQRVDLTKLKDHQVR
ERYTSNLDAKLRMNRDDSADTSTRSTNLINTLSSAAFETLPLKQKRDESK
EDFKDDDCFNRLLENRMAFSKGTQEFKKATMKIKNRVKYLRNEKLRREAE
TVNQHATRREAEELFRKIKNVSSSFQNVRRKNKCDSEKLRNYFYDHFTTK
LND
Run BLAST on NCBI

transcript from alignment at sc0004106:7030..7727

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043301 ID=TCONS_00043301|Name=TCONS_00043301|organism=Clytia hemisphaerica|type=transcript|length=698bp|location=Sequence derived from alignment at sc0004106:7030..7727 (Clytia hemisphaerica)
GTGGATTTTGGTTGATATCGTCTTCATTGTCCTGAAGCATTTCAATGAAG
GATGGGACAGAATCGAGTTCATTCGGAATTTCAGCCTAATCGTTAAGCTT
CGTGGTGAAGTGGTCATAAAAATAGTTTCTGAGTTTTTCGGAGTCACATT
TGTTTTTCCTGCGAACGTTTTGGAACGAAGAACTAACATTTTTAATCTTT
CTGAACAGTTCCTCAGCTTCTCTACGAGTTGCGTGCTGGTTTACCGTCTC
GGCTTCGCGTCTTAGCTTTTCGTTACGTAGGTATTTCACACGATTCTTTA
TCTTCATGGTAGCTTTCTTGAATTCTTGAGTACCTTTCGAAAAAGCCATT
CTGTTTTCAAGAAGTCTATTGAAGCAATCATCGTCTTTGAAGTCCTCTTT
GGATTCGTCACGTTTTTGTTTCAGTGGAAGCGTTTCGAATGCAGCTGAAG
AAAGCGTGTTAATTAAGTTTGTTGATCTAGTGGAGGTATCGGCTGAATCA
TCTCTATTCATTCGTAGTTTTGCGTCTAGGTTAGAGGTGTATCGTTCACG
GACTTGATGATCTTTGAGTTTAGTGAGGTCAACACGTTGTCTCGGAGGTT
TGGGATTGTTGCAGAATCTCTTTCGACTTTTCTTTGAGGTGGGAGCAAAC
ATTGTGGCTTTTAAAAGTCGGTGATCAGTCTCGGTATCGAAACTGCGG

Coding sequence (CDS) from alignment at sc0004106:7030..7727

>TCONS_00043301 ID=TCONS_00043301|Name=TCONS_00043301|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0004106:7030..7727 (Clytia hemisphaerica)
CTAATCGTTAAGCTTCGTGGTGAAGTGGTCATAAAAATAGTTTCTGAGTT
TTTCGGAGTCACATTTGTTTTTCCTGCGAACGTTTTGGAACGAAGAACTA
ACATTTTTAATCTTTCTGAACAGTTCCTCAGCTTCTCTACGAGTTGCGTG
CTGGTTTACCGTCTCGGCTTCGCGTCTTAGCTTTTCGTTACGTAGGTATT
TCACACGATTCTTTATCTTCATGGTAGCTTTCTTGAATTCTTGAGTACCT
TTCGAAAAAGCCATTCTGTTTTCAAGAAGTCTATTGAAGCAATCATCGTC
TTTGAAGTCCTCTTTGGATTCGTCACGTTTTTGTTTCAGTGGAAGCGTTT
CGAATGCAGCTGAAGAAAGCGTGTTAATTAAGTTTGTTGATCTAGTGGAG
GTATCGGCTGAATCATCTCTATTCATTCGTAGTTTTGCGTCTAGGTTAGA
GGTGTATCGTTCACGGACTTGATGATCTTTGAGTTTAGTGAGGTCAACAC
GTTGTCTCGGAGGTTTGGGATTGTTGCAGAATCTCTTTCGACTTTTCTTT
GAGGTGGGAGCAAACATTGTGGCTTTTAAAAGTCGGTGATCAGTCTCGGT
ATCGAAACTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027009XLOC_027009Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043301-proteinTCONS_00043301-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043301-exon-sc0004106-1491911889:7030..7727TCONS_00043301-exon-sc0004106-1491911889:7030..7727Clytia hemisphaericaexon
TCONS_00043301-exon-sc0004106-1510915933:7030..7727TCONS_00043301-exon-sc0004106-1510915933:7030..7727Clytia hemisphaericaexon
TCONS_00043301-exon-sc0004106-1575043694:7030..7727TCONS_00043301-exon-sc0004106-1575043694:7030..7727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004106supercontigsc0004106:7030..7727 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.290206	0.495245	0.98576	0.401838	0.0978399	0.231943	0.0932766	0.174649	0.122276	0.151458	0	0.048319	0	0	0.164789	0.132633	0	0.0558241	0	0.0807047	0.070147	0.102646	0	0	0	0.13904	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top