TCONS_00043288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043288
Unique NameTCONS_00043288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043288 ID=TCONS_00043288|Name=TCONS_00043288|organism=Clytia hemisphaerica|type=transcript|length=273bp
CTTGCCTTATCAAAATTGCAGCAATGATTTTTCAAATCGGCGCCCCTGAG
TGTTCCTTAATTTGTACTAATTTACGTATGAGGGAGGGATTATTTACTAG
ATCAGCGCTCAGAACATATCGTTCATATATTCGAATAGTAAAGGAGGCTT
tggccaaatagaaaatttttgaaagtcaaccaaataacataaaaaataaa
ataaaaaagccaTGAATTTGATACTTATCAAGAAGATATGGAAGAAGcta
gtgcgagcgaagcgagcaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0004096:899..1171

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043288 ID=TCONS_00043288|Name=TCONS_00043288|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0004096:899..1171 (Clytia hemisphaerica)
ttttttgctcgcttcgctcgcactagCTTCTTCCATATCTTCTTGATAAG
TATCAAATTCAtggcttttttattttattttttatgttatttggttgact
ttcaaaaattttctatttggccaAAGCCTCCTTTACTATTCGAATATATG
AACGATATGTTCTGAGCGCTGATCTAGTAAATAATCCCTCCCTCATACGT
AAATTAGTACAAATTAAGGAACACTCAGGGGCGCCGATTTGAAAAATCAT
TGCTGCAATTTTGATAAGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026999XLOC_026999Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043288-exon-sc0004096-1491911889:899..1171TCONS_00043288-exon-sc0004096-1491911889:899..1171Clytia hemisphaericaexon
TCONS_00043288-exon-sc0004096-1510915933:899..1171TCONS_00043288-exon-sc0004096-1510915933:899..1171Clytia hemisphaericaexon
TCONS_00043288-exon-sc0004096-1575043694:899..1171TCONS_00043288-exon-sc0004096-1575043694:899..1171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004096supercontigsc0004096:899..1171 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.39709	0	0	0.567134	0	0.401275	0	0.417321	0.35263	0.732176	0	0	0	0	2.15572	4.65767	1.45786	4.97656	0	0	2.58115	2.66921	2.24907	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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