TCONS_00043280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043280
Unique NameTCONS_00043280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043280 ID=TCONS_00043280|Name=TCONS_00043280|organism=Clytia hemisphaerica|type=transcript|length=1275bp
GGAAATTGTACTAAGAAGCCTAATaaaaatctatattttgtactataaag
ttaaaaagtttttaaggaAATGAATTTTTACTTTCGAATCAGGTATAGTA
GGGCTGCTATGGGCGTCATTATTTCATTTCCATGGTTACCGTGACGTCAC
GATCAGTGAAATTAACGATCAACGTAAAGAAATGGCGGCAAGATTAAACC
TCGGTTACCCAGCAAGACATCCAAAGGATATAGGAGATGATTATAAGGCA
GCAGAGACAAATGGAGACTTGACTTGGGGATTCGATGTTATCGTAGATTG
CTCagGAAATAAACGTGCCGTAGAAGATGCTTTCCGCTGGTTACGCCATG
GCGCCACTTTCGTTTTATTCGGCGTTTGTGGGAAAGGTGTCAACGTGAGT
TTCGAAGGGTACAGTATCTACCAAAAAGAATTACGAATCGTCAGCTCGTT
TCTAAACCGCTTCTCGTACGCGCGGACTGTAAATCTCGTACACCATATGT
CAGATAGGTATTTAGACTTTAAACATTTGGAGGTCGCCTCTTACAGCTTA
CATGACTATGAGGCCGCCCTTGACGCCCTACGGAAAGGTGTGATTTCAAA
AGCTGTCTTTGAGTTTTAAGCACATGCAATCTGGTTATATTTATCATCAT
TATCATCATATAACGCCCTTGACGCCCTATGGAGGGGCGGGATTTCCAAA
GCTGTCTTTGAGTTTCCAATGGATGTAAGCTAATGGTGGTTTATGATTTT
GGTGGTAAAGCCATCCGTAGGGCTTTTAATTAGTTTTTCCACGAGAGCTT
TGTAGATAAAAGATATATTCGACATTTGGCTACGAAATGAAGCCATTCTA
TTGGTTAAATTCAGCTCTTACGTCACATCTAACCAATAAAATGGCTTCAT
TTCGTTTTAGCGAAACGGAATCGTTACGTGCGAAATTTTGTTCTTCACTT
CATTAAAAAATATCATACCTATCTTTTGTGTCGTAAAAGTAAACGATTGG
GGAGATTAGTAGAATTCGCCCTAGCTTTCAACCCACGTGTTCGGTAGAGG
CACAGTGGAATTTCCTCGGTCTCGGTTGTGAATTTTTCTTCATCCATATT
AGAGATTATTTTACATTATTTAACAAATTTTCATTCACTTTTTGTAAAAA
TTACAATTTTTTTTTTGGATTCATTTTTTTAATTTAGTAGATTGCAATTA
GTAGTTATGGAGAGAAATAATGTTTATACTTTGTAGATGAAATGGAAGTA
AAGATTTATTGTTACTTTAAAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00043280-protein

>TCONS_00043280-protein ID=TCONS_00043280-protein|Name=TCONS_00043280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MAARLNLGYPARHPKDIGDDYKAAETNGDLTWGFDVIVDCSGNKRAVEDA
FRWLRHGATFVLFGVCGKGVNVSFEGYSIYQKELRIVSSFLNRFSYARTV
NLVHHMSDRYLDFKHLEVASYSLHDYEAALDALRKGVISKAVFEF
Run BLAST on NCBI

transcript from alignment at sc0004089:1689..3658-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043280 ID=TCONS_00043280|Name=TCONS_00043280|organism=Clytia hemisphaerica|type=transcript|length=1970bp|location=Sequence derived from alignment at sc0004089:1689..3658- (Clytia hemisphaerica)
GGAAATTGTACTAAGAAGCCTAATAAAAATCTATATTTTGTACTATAAAG
TTAAAAAGTTTTTAAGGAAATGAATTTTTACTTTCGAATCAGGTATAGTA
GGGCTGCTATGGGCGTCATTATTTCATTTCCATGGTTACCGTGACGTCAC
GATCAGTGAAATTAACGATCAACGTAAAGAAATGGCGGCAAGATTAAACC
TCGGTTACCCAGCAAGACATCCAAAGGATATAGGAGATGATTATAAGGCA
GCAGAGACAAATGGAGACTTGACTTGGGGATTCGATGTTATCGTAGATTG
CTCAGGTAATACACCTTTTCGACCGAAGCCGCCAATTGCCGCGCGGGCAT
TTTGTGTCCGTTTTACCACCCAGACAAACCGTTCCAGTCTTTTTTTCTCA
CTATAGAGAAAAGAAAAAGGTGTAAAAAAAGGGTTAGATCGAGTTTAGGG
GGATAATTAAATAATAAAGTGGCACGCGCCTGACTGCGCGACTACGGTAT
ATTGTAATGTCATTTTTCTTAGTTTTAAGCCAGCTTAAGCTACTATTTCA
TGTCTATCCTTTTTGTCTTCAGATTTCTATAAGCTTGCTTGTTAAACTGA
CTGTTTCAAATTATTTTCTTCGAATATTTTCGCTACTATTTCTTTGTTTT
ATGGAAATCAACTAACTCGGCTCAATGGGATCCACCCCAATGGCTCCGCA
CGAATTAAATTCATAGCAATTATGTAGTTCGAGAAAGTATTATTTAGACC
ATGTTCGCACGTGACGCGAAACGAAATGAAGCCATTCTATTGGCTAGAAG
TGACGTAACACTTAAATGTAACCAATAGATTCGCTTCATTTCGTTTCGGA
GTGAAACGGAACCGTCATGCGTGAACATGGTCTTTGTGCTGACATCCGCA
GGGGGGCTGGCATACTGTAGATAGGGGTAATAAGAATAATTGATATTGAA
ATGATTGAAATTGCACATCACGATTAAAAAATTTTTCATTCCCTTCTCAG
GAAATAAACGTGCCGTAGAAGATGCTTTCCGCTGGTTACGCCATGGCGCC
ACTTTCGTTTTATTCGGCGTTTGTGGGAAAGGTGTCAACGTGAGTTTCGA
AGGGTACAGTATCTACCAAAAAGAATTACGAATCGTCAGCTCGTTTCTAA
ACCGCTTCTCGTACGCGCGGACTGTAAATCTCGTACACCATATGTCAGAT
AGGTATTTAGACTTTAAACATTTGGAGGTCGCCTCTTACAGCTTACATGA
CTATGAGGCCGCCCTTGACGCCCTACGGAAAGGTGTGATTTCAAAAGCTG
TCTTTGAGTTTTAAGCACATGCAATCTGGTTATATTTATCATCATTATCA
TCATATAACGCCCTTGACGCCCTATGGAGGGGCGGGATTTCCAAAGCTGT
CTTTGAGTTTCCAATGGATGTAAGCTAATGGTGGTTTATGATTTTGGTGG
TAAAGCCATCCGTAGGGCTTTTAATTAGTTTTTCCACGAGAGCTTTGTAG
ATAAAAGATATATTCGACATTTGGCTACGAAATGAAGCCATTCTATTGGT
TAAATTCAGCTCTTACGTCACATCTAACCAATAAAATGGCTTCATTTCGT
TTTAGCGAAACGGAATCGTTACGTGCGAAATTTTGTTCTTCACTTCATTA
AAAAATATCATACCTATCTTTTGTGTCGTAAAAGTAAACGATTGGGGAGA
TTAGTAGAATTCGCCCTAGCTTTCAACCCACGTGTTCGGTAGAGGCACAG
TGGAATTTCCTCGGTCTCGGTTGTGAATTTTTCTTCATCCATATTAGAGA
TTATTTTACATTATTTAACAAATTTTCATTCACTTTTTGTAAAAATTACA
ATTTTTTTTTTGGATTCATTTTTTTAATTTAGTAGATTGCAATTAGTAGT
TATGGAGAGAAATAATGTTTATACTTTGTAGATGAAATGGAAGTAAAGAT
TTATTGTTACTTTAAAAAAT

Coding sequence (CDS) from alignment at sc0004089:1689..3658-

>TCONS_00043280 ID=TCONS_00043280|Name=TCONS_00043280|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0004089:1689..3658- (Clytia hemisphaerica)
GAAATAAACGTGCCGTAGAAGATGCTTTCCGCTGGTTACGCCATGGCGCC
ACTTTCGTTTTATTCGGCGTTTGTGGGAAAGGTGTCAACGTGAGTTTCGA
AGGGTACAGTATCTACCAAAAAGAATTACGAATCGTCAGCTCGTTTCTAA
ACCGCTTCTCGTACGCGCGGACTGTAAATCTCGTACACCATATGTCAGAT
AGGTATTTAGACTTTAAACATTTGGAGGTCGCCTCTTACAGCTTACATGA
CTATGAGGCCGCCCTTGACGCCCTACGGAAAGGTGTGATTTCAAAAGCTG
TCTTTGAGTTTTAAATGGCGGCAAGATTAAACCTCGGTTACCCAGCAAGA
CATCCAAAGGATATAGGAGATGATTATAAGGCAGCAGAGACAAATGGAGA
CTTGACTTGGGGATTCGATGTTATCGTAGATTGCTCAGGAAATAAACGTG
CCGTAGAAGATGCTTTCCGCTGGTTACGCCATGGCGCCACTTTCGTTTTA
TTCGGCGTTTGTGGGAAAGGTGTCAACGTGAGTTTCGAAGGGTACAGTAT
CTACCAAAAAGAATTACGAATCGTCAGCTCGTTTCTAAACCGCTTCTCGT
ACGCGCGGACTGTAAATCTCGTACACCATATGTCAGATAGGTATTTAGAC
TTTAAACATTTGGAGGTCGCCTCTTACAGCTTACATGACTATGAGGCCGC
CCTTGACGCCCTACGGAAAGGTGTGATTTCAAAAGCTGTCTTTGAGTTTT
AAATGGCGGCAAGATTAAACCTCGGTTACCCAGCAAGACATCCAAAGGAT
ATAGGAGATGATTATAAGGCAGCAGAGACAAATGGAGACTTGACTTGGGG
ATTCGATGTTATCGTAGATTGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026992XLOC_026992Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043280-proteinTCONS_00043280-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043280-exon-sc0004089-1575043694:3354..3658TCONS_00043280-exon-sc0004089-1575043694:3354..3658Clytia hemisphaericaexon
TCONS_00043280-exon-sc0004089-1575043694:1689..2658TCONS_00043280-exon-sc0004089-1575043694:1689..2658Clytia hemisphaericaexon
TCONS_00043280-exon-sc0004089-1510915933:3354..3658TCONS_00043280-exon-sc0004089-1510915933:3354..3658Clytia hemisphaericaexon
TCONS_00043280-exon-sc0004089-1510915933:1689..2658TCONS_00043280-exon-sc0004089-1510915933:1689..2658Clytia hemisphaericaexon
TCONS_00043280-exon-sc0004089-1491911889:3354..3658TCONS_00043280-exon-sc0004089-1491911889:3354..3658Clytia hemisphaericaexon
TCONS_00043280-exon-sc0004089-1491911889:1689..2658TCONS_00043280-exon-sc0004089-1491911889:1689..2658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004089supercontigsc0004089:1689..3658 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.6053	24.9783	7.11538	5.59254	21.338	16.2645	18.3033	19.9148	12.9767	18.6553	9.31834	8.91989	10.5571	7.93867	11.2458	13.1124	11.4533	14.1408	3.5857	9.94118	6.16258	7.37569	20.5162	15.9534	9.54558	7.91052	17.0313	10.934	24.3565	22.0034
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013149ADH_C
IPR016040NAD(P)-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top