TCONS_00043275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043275
Unique NameTCONS_00043275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043275 ID=TCONS_00043275|Name=TCONS_00043275|organism=Clytia hemisphaerica|type=transcript|length=620bp
CAATTTGTCGACCTACTGATCCATCAACCTAACGATGATCAATCAACCTA
CAACGATGATCTCCATATCATAATGACAGATCCATATCATCCTACTAACT
AGCGCACTAGCACTAGCTAAAGCTGATCCATATTATTATATCGATTGTGG
TGTCTGTGGATGATATCAGATGTCAGATGATTACCCACTGATTGATGATC
CTTCTgtgatgaaatttgaaaaaaataaaacaaacaaacctttttcttgC
TTATTAGAATCCATAACGAGATAACTAGCAATGTGTGTTTGTCAATTTGG
ATATAAGAGCACAGTCGATTGGGAACGATTGGCACTGAATGAAGTATGAG
CAGAATACAGGGGAAGTTTACACAACTAGGATACCATTATTAAAGCGCAA
ACTAAATGAAGAGGAGTGAGCGCAAGGCAGCGGACacggcacttaaaaat
cacggaTAATCATTGATTTAAGACTCTTGCGAAATTAATGATTATCGTTG
ATTTAACGGTGATAACGGGTTGCCGACCAAGAACATCATCACGCAACGAG
TTGACGATGTTCGGTTTTTGGCGGaaaatttcttcgaatttcGCGAAATT
CTTTTCgcacaaaattttcc
Run BLAST on NCBI

transcript from alignment at sc0004084:6587..7206

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043275 ID=TCONS_00043275|Name=TCONS_00043275|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at sc0004084:6587..7206 (Clytia hemisphaerica)
ggaaaattttgtgcGAAAAGAATTTCGCgaaattcgaagaaattttCCGC
CAAAAACCGAACATCGTCAACTCGTTGCGTGATGATGTTCTTGGTCGGCA
ACCCGTTATCACCGTTAAATCAACGATAATCATTAATTTCGCAAGAGTCT
TAAATCAATGATTAtccgtgatttttaagtgccgtGTCCGCTGCCTTGCG
CTCACTCCTCTTCATTTAGTTTGCGCTTTAATAATGGTATCCTAGTTGTG
TAAACTTCCCCTGTATTCTGCTCATACTTCATTCAGTGCCAATCGTTCCC
AATCGACTGTGCTCTTATATCCAAATTGACAAACACACATTGCTAGTTAT
CTCGTTATGGATTCTAATAAGcaagaaaaaggtttgtttgttttattttt
ttcaaatttcatcacAGAAGGATCATCAATCAGTGGGTAATCATCTGACA
TCTGATATCATCCACAGACACCACAATCGATATAATAATATGGATCAGCT
TTAGCTAGTGCTAGTGCGCTAGTTAGTAGGATGATATGGATCTGTCATTA
TGATATGGAGATCATCGTTGTAGGTTGATTGATCATCGTTAGGTTGATGG
ATCAGTAGGTCGACAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026988XLOC_026988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043275-exon-sc0004084-1491911889:6587..7206TCONS_00043275-exon-sc0004084-1491911889:6587..7206Clytia hemisphaericaexon
TCONS_00043275-exon-sc0004084-1510915933:6587..7206TCONS_00043275-exon-sc0004084-1510915933:6587..7206Clytia hemisphaericaexon
TCONS_00043275-exon-sc0004084-1575043694:6587..7206TCONS_00043275-exon-sc0004084-1575043694:6587..7206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004084supercontigsc0004084:6587..7206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185661	0	0.193578	0.339348	0.161317	0.490703	0	0	0	0	0.158024	0	0.194714	1.21385	0.558411	0.221256	0	0.369968	0.449806	1.08926	0.588947	0	0.671599	0.538343	0.0963994	0.0857521	3.25662	0.739574	0.578103	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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